Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02615

Experiment: Pectic galactan from potato 2.5 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_02614 and BACOVA_02615 are separated by 216 nucleotidesBACOVA_02615 and BACOVA_02616 are separated by 75 nucleotides BACOVA_02614: BACOVA_02614 - dihydroorotate dehydrogenase 1B, at 383,245 to 384,156 _02614 BACOVA_02615: BACOVA_02615 - tRNA (guanine-N(1)-)-methyltransferase, at 384,373 to 385,050 _02615 BACOVA_02616: BACOVA_02616 - DNA ligase (NAD+), at 385,126 to 387,126 _02616 Position (kb) 384 385 386Strain fitness (log2 ratio) -2 -1 0 1at 384.467 kb on - strand, within BACOVA_02615at 384.495 kb on - strand, within BACOVA_02615at 384.510 kb on + strand, within BACOVA_02615at 384.511 kb on - strand, within BACOVA_02615at 384.512 kb on + strand, within BACOVA_02615at 384.513 kb on - strand, within BACOVA_02615at 384.515 kb on - strand, within BACOVA_02615at 384.515 kb on - strand, within BACOVA_02615at 384.644 kb on - strand, within BACOVA_02615at 384.644 kb on - strand, within BACOVA_02615at 384.648 kb on - strand, within BACOVA_02615at 384.708 kb on + strand, within BACOVA_02615at 384.801 kb on + strand, within BACOVA_02615at 384.852 kb on + strand, within BACOVA_02615at 384.897 kb on - strand, within BACOVA_02615at 384.953 kb on - strand, within BACOVA_02615at 384.953 kb on - strand, within BACOVA_02615at 385.036 kb on - strandat 385.090 kb on + strandat 385.125 kb on + strandat 385.125 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Pectic galactan from potato 2.5 mg/mL (C)
remove
384,467 - BACOVA_02615 0.14 -0.4
384,495 - BACOVA_02615 0.18 -1.9
384,510 + BACOVA_02615 0.20 -1.0
384,511 - BACOVA_02615 0.20 -1.6
384,512 + BACOVA_02615 0.21 -1.9
384,513 - BACOVA_02615 0.21 -0.7
384,515 - BACOVA_02615 0.21 -0.1
384,515 - BACOVA_02615 0.21 -1.6
384,644 - BACOVA_02615 0.40 -0.9
384,644 - BACOVA_02615 0.40 -1.4
384,648 - BACOVA_02615 0.41 +1.4
384,708 + BACOVA_02615 0.49 +0.2
384,801 + BACOVA_02615 0.63 -1.0
384,852 + BACOVA_02615 0.71 -2.2
384,897 - BACOVA_02615 0.77 -1.0
384,953 - BACOVA_02615 0.86 +0.2
384,953 - BACOVA_02615 0.86 -0.6
385,036 - -1.6
385,090 + -1.1
385,125 + -0.7
385,125 + -0.5

Or see this region's nucleotide sequence