Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02583

Experiment: Pectic galactan from potato 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02582 and BACOVA_02583 are separated by 75 nucleotidesBACOVA_02583 and BACOVA_02584 are separated by 25 nucleotides BACOVA_02582: BACOVA_02582 - outer membrane efflux protein, at 347,014 to 348,513 _02582 BACOVA_02583: BACOVA_02583 - efflux transporter, RND family, MFP subunit, at 348,589 to 349,839 _02583 BACOVA_02584: BACOVA_02584 - efflux ABC transporter, permease protein, at 349,865 to 352,243 _02584 Position (kb) 348 349 350Strain fitness (log2 ratio) -3 -2 -1 0 1at 347.598 kb on + strand, within BACOVA_02582at 347.633 kb on - strand, within BACOVA_02582at 347.650 kb on - strand, within BACOVA_02582at 347.654 kb on - strand, within BACOVA_02582at 347.680 kb on + strand, within BACOVA_02582at 347.696 kb on - strand, within BACOVA_02582at 347.702 kb on + strand, within BACOVA_02582at 347.703 kb on - strand, within BACOVA_02582at 347.706 kb on + strand, within BACOVA_02582at 347.707 kb on - strand, within BACOVA_02582at 347.707 kb on - strand, within BACOVA_02582at 347.742 kb on + strand, within BACOVA_02582at 347.933 kb on + strand, within BACOVA_02582at 347.934 kb on - strand, within BACOVA_02582at 347.934 kb on - strand, within BACOVA_02582at 347.934 kb on - strand, within BACOVA_02582at 348.012 kb on + strand, within BACOVA_02582at 348.012 kb on + strand, within BACOVA_02582at 348.016 kb on + strand, within BACOVA_02582at 348.017 kb on - strand, within BACOVA_02582at 348.017 kb on - strand, within BACOVA_02582at 348.089 kb on - strand, within BACOVA_02582at 348.089 kb on - strand, within BACOVA_02582at 348.092 kb on + strand, within BACOVA_02582at 348.092 kb on + strand, within BACOVA_02582at 348.093 kb on - strand, within BACOVA_02582at 348.093 kb on - strand, within BACOVA_02582at 348.097 kb on - strand, within BACOVA_02582at 348.115 kb on - strand, within BACOVA_02582at 348.153 kb on - strand, within BACOVA_02582at 348.337 kb on - strand, within BACOVA_02582at 348.343 kb on - strand, within BACOVA_02582at 348.398 kb on - strandat 348.419 kb on - strandat 348.419 kb on - strandat 348.431 kb on - strandat 348.434 kb on - strandat 348.436 kb on - strandat 348.493 kb on + strandat 348.554 kb on - strandat 348.554 kb on - strandat 348.571 kb on - strandat 348.597 kb on - strandat 348.634 kb on + strandat 348.634 kb on + strandat 348.656 kb on + strandat 348.696 kb on - strandat 348.717 kb on - strand, within BACOVA_02583at 348.769 kb on + strand, within BACOVA_02583at 348.774 kb on - strand, within BACOVA_02583at 348.800 kb on + strand, within BACOVA_02583at 348.800 kb on + strand, within BACOVA_02583at 348.820 kb on - strand, within BACOVA_02583at 348.894 kb on + strand, within BACOVA_02583at 348.894 kb on + strand, within BACOVA_02583at 348.964 kb on - strand, within BACOVA_02583at 348.964 kb on - strand, within BACOVA_02583at 348.968 kb on - strand, within BACOVA_02583at 348.968 kb on - strand, within BACOVA_02583at 349.033 kb on - strand, within BACOVA_02583at 349.036 kb on + strand, within BACOVA_02583at 349.205 kb on + strand, within BACOVA_02583at 349.210 kb on - strand, within BACOVA_02583at 349.252 kb on + strand, within BACOVA_02583at 349.261 kb on - strand, within BACOVA_02583at 349.261 kb on - strand, within BACOVA_02583at 349.279 kb on - strand, within BACOVA_02583at 349.315 kb on - strand, within BACOVA_02583at 349.323 kb on - strand, within BACOVA_02583at 349.418 kb on - strand, within BACOVA_02583at 349.420 kb on + strand, within BACOVA_02583at 349.420 kb on + strand, within BACOVA_02583at 349.422 kb on + strand, within BACOVA_02583at 349.522 kb on - strand, within BACOVA_02583at 349.568 kb on + strand, within BACOVA_02583at 349.569 kb on - strand, within BACOVA_02583at 349.569 kb on - strand, within BACOVA_02583at 349.676 kb on - strand, within BACOVA_02583at 349.676 kb on - strand, within BACOVA_02583at 349.748 kb on - strandat 349.766 kb on + strandat 349.788 kb on + strandat 349.799 kb on - strandat 349.803 kb on + strandat 349.913 kb on + strandat 349.918 kb on + strandat 349.925 kb on - strandat 349.938 kb on + strandat 349.946 kb on - strandat 349.950 kb on + strandat 349.964 kb on - strandat 349.993 kb on + strandat 350.030 kb on + strandat 350.031 kb on - strandat 350.067 kb on + strandat 350.067 kb on + strandat 350.068 kb on - strandat 350.068 kb on - strandat 350.068 kb on - strandat 350.102 kb on + strandat 350.122 kb on - strand, within BACOVA_02584at 350.182 kb on + strand, within BACOVA_02584at 350.210 kb on - strand, within BACOVA_02584at 350.216 kb on + strand, within BACOVA_02584at 350.217 kb on - strand, within BACOVA_02584at 350.217 kb on - strand, within BACOVA_02584at 350.244 kb on + strand, within BACOVA_02584at 350.383 kb on - strand, within BACOVA_02584at 350.399 kb on - strand, within BACOVA_02584at 350.399 kb on - strand, within BACOVA_02584at 350.462 kb on - strand, within BACOVA_02584at 350.462 kb on - strand, within BACOVA_02584at 350.462 kb on - strand, within BACOVA_02584at 350.503 kb on - strand, within BACOVA_02584at 350.599 kb on - strand, within BACOVA_02584at 350.606 kb on - strand, within BACOVA_02584at 350.606 kb on - strand, within BACOVA_02584at 350.606 kb on - strand, within BACOVA_02584at 350.606 kb on - strand, within BACOVA_02584at 350.610 kb on - strand, within BACOVA_02584at 350.625 kb on + strand, within BACOVA_02584at 350.647 kb on + strand, within BACOVA_02584at 350.653 kb on - strand, within BACOVA_02584at 350.681 kb on - strand, within BACOVA_02584at 350.707 kb on - strand, within BACOVA_02584at 350.748 kb on + strand, within BACOVA_02584at 350.767 kb on + strand, within BACOVA_02584at 350.774 kb on + strand, within BACOVA_02584at 350.775 kb on - strand, within BACOVA_02584at 350.826 kb on + strand, within BACOVA_02584at 350.827 kb on - strand, within BACOVA_02584

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectic galactan from potato 2.5 mg/mL (C)
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347,598 + BACOVA_02582 0.39 -0.1
347,633 - BACOVA_02582 0.41 -1.2
347,650 - BACOVA_02582 0.42 +0.4
347,654 - BACOVA_02582 0.43 +1.0
347,680 + BACOVA_02582 0.44 -0.5
347,696 - BACOVA_02582 0.45 +0.2
347,702 + BACOVA_02582 0.46 -1.8
347,703 - BACOVA_02582 0.46 -0.3
347,706 + BACOVA_02582 0.46 -1.0
347,707 - BACOVA_02582 0.46 +0.3
347,707 - BACOVA_02582 0.46 -1.4
347,742 + BACOVA_02582 0.49 -0.8
347,933 + BACOVA_02582 0.61 +0.5
347,934 - BACOVA_02582 0.61 -0.5
347,934 - BACOVA_02582 0.61 +0.5
347,934 - BACOVA_02582 0.61 -2.5
348,012 + BACOVA_02582 0.67 +0.0
348,012 + BACOVA_02582 0.67 +0.5
348,016 + BACOVA_02582 0.67 +0.5
348,017 - BACOVA_02582 0.67 -2.5
348,017 - BACOVA_02582 0.67 -1.2
348,089 - BACOVA_02582 0.72 -3.2
348,089 - BACOVA_02582 0.72 +0.5
348,092 + BACOVA_02582 0.72 +0.0
348,092 + BACOVA_02582 0.72 -0.4
348,093 - BACOVA_02582 0.72 -0.2
348,093 - BACOVA_02582 0.72 +1.2
348,097 - BACOVA_02582 0.72 -0.1
348,115 - BACOVA_02582 0.73 -0.3
348,153 - BACOVA_02582 0.76 +0.7
348,337 - BACOVA_02582 0.88 -1.4
348,343 - BACOVA_02582 0.89 +1.3
348,398 - -1.7
348,419 - -1.0
348,419 - +0.0
348,431 - -0.3
348,434 - +0.4
348,436 - +0.9
348,493 + -1.3
348,554 - -0.2
348,554 - -1.8
348,571 - -0.3
348,597 - +1.0
348,634 + -0.8
348,634 + -0.5
348,656 + -1.2
348,696 - +0.4
348,717 - BACOVA_02583 0.10 +0.8
348,769 + BACOVA_02583 0.14 -0.7
348,774 - BACOVA_02583 0.15 -1.8
348,800 + BACOVA_02583 0.17 +0.2
348,800 + BACOVA_02583 0.17 -0.4
348,820 - BACOVA_02583 0.18 -0.4
348,894 + BACOVA_02583 0.24 -1.2
348,894 + BACOVA_02583 0.24 -0.1
348,964 - BACOVA_02583 0.30 +0.6
348,964 - BACOVA_02583 0.30 -0.4
348,968 - BACOVA_02583 0.30 -2.3
348,968 - BACOVA_02583 0.30 +1.6
349,033 - BACOVA_02583 0.35 +0.4
349,036 + BACOVA_02583 0.36 -1.5
349,205 + BACOVA_02583 0.49 -0.4
349,210 - BACOVA_02583 0.50 -1.8
349,252 + BACOVA_02583 0.53 +0.7
349,261 - BACOVA_02583 0.54 -0.4
349,261 - BACOVA_02583 0.54 -1.2
349,279 - BACOVA_02583 0.55 -1.5
349,315 - BACOVA_02583 0.58 -1.4
349,323 - BACOVA_02583 0.59 -0.7
349,418 - BACOVA_02583 0.66 +0.5
349,420 + BACOVA_02583 0.66 -1.0
349,420 + BACOVA_02583 0.66 +1.5
349,422 + BACOVA_02583 0.67 -0.4
349,522 - BACOVA_02583 0.75 +0.0
349,568 + BACOVA_02583 0.78 -1.1
349,569 - BACOVA_02583 0.78 -1.0
349,569 - BACOVA_02583 0.78 -1.0
349,676 - BACOVA_02583 0.87 -1.1
349,676 - BACOVA_02583 0.87 +1.1
349,748 - +0.2
349,766 + -0.1
349,788 + +0.5
349,799 - -0.5
349,803 + +0.9
349,913 + -1.0
349,918 + -1.3
349,925 - +0.7
349,938 + -0.6
349,946 - -0.8
349,950 + -2.7
349,964 - -0.8
349,993 + +1.7
350,030 + -0.3
350,031 - +0.5
350,067 + +1.5
350,067 + -1.3
350,068 - -2.1
350,068 - +1.0
350,068 - -0.4
350,102 + -1.1
350,122 - BACOVA_02584 0.11 +0.5
350,182 + BACOVA_02584 0.13 -2.4
350,210 - BACOVA_02584 0.15 -0.5
350,216 + BACOVA_02584 0.15 -0.1
350,217 - BACOVA_02584 0.15 +0.5
350,217 - BACOVA_02584 0.15 -0.3
350,244 + BACOVA_02584 0.16 +1.2
350,383 - BACOVA_02584 0.22 -0.1
350,399 - BACOVA_02584 0.22 -0.6
350,399 - BACOVA_02584 0.22 +1.5
350,462 - BACOVA_02584 0.25 -0.7
350,462 - BACOVA_02584 0.25 +0.8
350,462 - BACOVA_02584 0.25 +0.7
350,503 - BACOVA_02584 0.27 -0.8
350,599 - BACOVA_02584 0.31 -0.4
350,606 - BACOVA_02584 0.31 +0.5
350,606 - BACOVA_02584 0.31 -1.4
350,606 - BACOVA_02584 0.31 -1.3
350,606 - BACOVA_02584 0.31 +0.2
350,610 - BACOVA_02584 0.31 +0.6
350,625 + BACOVA_02584 0.32 +1.0
350,647 + BACOVA_02584 0.33 -0.7
350,653 - BACOVA_02584 0.33 -0.1
350,681 - BACOVA_02584 0.34 +1.0
350,707 - BACOVA_02584 0.35 -1.3
350,748 + BACOVA_02584 0.37 -0.5
350,767 + BACOVA_02584 0.38 -0.4
350,774 + BACOVA_02584 0.38 +1.0
350,775 - BACOVA_02584 0.38 +1.4
350,826 + BACOVA_02584 0.40 +0.9
350,827 - BACOVA_02584 0.40 -0.8

Or see this region's nucleotide sequence