Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01920

Experiment: Pectic galactan from potato 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01919 and BACOVA_01920 are separated by 46 nucleotidesBACOVA_01920 and BACOVA_01921 overlap by 17 nucleotidesBACOVA_01921 and BACOVA_01922 overlap by 4 nucleotides BACOVA_01919: BACOVA_01919 - arylsulfatase, at 128,888 to 130,867 _01919 BACOVA_01920: BACOVA_01920 - GtrA-like protein, at 130,914 to 131,333 _01920 BACOVA_01921: BACOVA_01921 - glycosyltransferase, group 2 family protein, at 131,317 to 132,273 _01921 BACOVA_01922: BACOVA_01922 - polysaccharide deacetylase, at 132,270 to 133,073 _01922 Position (kb) 130 131 132Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 129.940 kb on + strand, within BACOVA_01919at 129.956 kb on + strand, within BACOVA_01919at 129.968 kb on - strand, within BACOVA_01919at 129.968 kb on - strand, within BACOVA_01919at 129.982 kb on + strand, within BACOVA_01919at 130.025 kb on - strand, within BACOVA_01919at 130.025 kb on - strand, within BACOVA_01919at 130.120 kb on - strand, within BACOVA_01919at 130.120 kb on - strand, within BACOVA_01919at 130.123 kb on + strand, within BACOVA_01919at 130.138 kb on + strand, within BACOVA_01919at 130.138 kb on + strand, within BACOVA_01919at 130.139 kb on - strand, within BACOVA_01919at 130.178 kb on + strand, within BACOVA_01919at 130.215 kb on + strand, within BACOVA_01919at 130.227 kb on - strand, within BACOVA_01919at 130.240 kb on + strand, within BACOVA_01919at 130.249 kb on + strand, within BACOVA_01919at 130.351 kb on + strand, within BACOVA_01919at 130.351 kb on + strand, within BACOVA_01919at 130.352 kb on - strand, within BACOVA_01919at 130.352 kb on - strand, within BACOVA_01919at 130.377 kb on + strand, within BACOVA_01919at 130.378 kb on - strand, within BACOVA_01919at 130.378 kb on - strand, within BACOVA_01919at 130.381 kb on + strand, within BACOVA_01919at 130.382 kb on - strand, within BACOVA_01919at 130.391 kb on + strand, within BACOVA_01919at 130.392 kb on - strand, within BACOVA_01919at 130.435 kb on - strand, within BACOVA_01919at 130.468 kb on + strand, within BACOVA_01919at 130.510 kb on + strand, within BACOVA_01919at 130.510 kb on + strand, within BACOVA_01919at 130.511 kb on - strand, within BACOVA_01919at 130.524 kb on + strand, within BACOVA_01919at 130.525 kb on - strand, within BACOVA_01919at 130.557 kb on - strand, within BACOVA_01919at 130.557 kb on - strand, within BACOVA_01919at 130.572 kb on + strand, within BACOVA_01919at 130.641 kb on - strand, within BACOVA_01919at 130.670 kb on + strandat 130.671 kb on - strandat 130.674 kb on + strandat 130.674 kb on + strandat 130.674 kb on + strandat 130.675 kb on - strandat 130.675 kb on - strandat 130.683 kb on - strandat 130.778 kb on - strandat 130.826 kb on + strandat 130.826 kb on + strandat 130.827 kb on - strandat 130.827 kb on - strandat 130.835 kb on + strandat 130.835 kb on + strandat 130.836 kb on - strandat 130.837 kb on + strandat 130.837 kb on + strandat 130.837 kb on + strandat 130.838 kb on - strandat 130.839 kb on + strandat 130.839 kb on + strandat 130.839 kb on + strandat 130.840 kb on - strandat 130.841 kb on + strandat 130.884 kb on + strandat 130.892 kb on - strandat 130.909 kb on + strandat 130.915 kb on + strandat 130.928 kb on + strandat 130.929 kb on - strandat 130.930 kb on + strandat 130.930 kb on + strandat 130.930 kb on + strandat 130.931 kb on - strandat 130.935 kb on - strandat 130.936 kb on + strandat 130.936 kb on + strandat 130.964 kb on + strand, within BACOVA_01920at 130.984 kb on - strand, within BACOVA_01920at 131.141 kb on - strand, within BACOVA_01920at 131.216 kb on - strand, within BACOVA_01920at 131.217 kb on + strand, within BACOVA_01920at 131.217 kb on + strand, within BACOVA_01920at 131.218 kb on - strand, within BACOVA_01920at 131.243 kb on + strand, within BACOVA_01920at 131.243 kb on + strand, within BACOVA_01920at 131.282 kb on + strand, within BACOVA_01920at 131.283 kb on - strand, within BACOVA_01920at 131.318 kb on + strandat 131.318 kb on + strandat 131.318 kb on + strandat 131.318 kb on + strandat 131.318 kb on + strandat 131.319 kb on - strandat 131.319 kb on - strandat 131.322 kb on + strandat 131.336 kb on + strandat 131.356 kb on - strandat 131.374 kb on + strandat 131.375 kb on - strandat 131.384 kb on + strandat 131.397 kb on + strandat 131.397 kb on + strandat 131.399 kb on + strandat 131.400 kb on - strandat 131.426 kb on - strand, within BACOVA_01921at 131.504 kb on + strand, within BACOVA_01921at 131.513 kb on + strand, within BACOVA_01921at 131.514 kb on - strand, within BACOVA_01921at 131.547 kb on + strand, within BACOVA_01921at 131.634 kb on + strand, within BACOVA_01921at 131.637 kb on - strand, within BACOVA_01921at 131.677 kb on + strand, within BACOVA_01921at 131.678 kb on - strand, within BACOVA_01921at 131.682 kb on + strand, within BACOVA_01921at 131.683 kb on - strand, within BACOVA_01921at 131.709 kb on + strand, within BACOVA_01921at 131.712 kb on + strand, within BACOVA_01921at 131.712 kb on + strand, within BACOVA_01921at 131.713 kb on - strand, within BACOVA_01921at 131.798 kb on + strand, within BACOVA_01921at 131.798 kb on + strand, within BACOVA_01921at 131.798 kb on + strand, within BACOVA_01921at 131.799 kb on - strand, within BACOVA_01921at 131.827 kb on + strand, within BACOVA_01921at 131.827 kb on + strand, within BACOVA_01921at 131.828 kb on - strand, within BACOVA_01921at 131.832 kb on + strand, within BACOVA_01921at 131.884 kb on + strand, within BACOVA_01921at 131.897 kb on + strand, within BACOVA_01921at 131.897 kb on + strand, within BACOVA_01921at 131.898 kb on - strand, within BACOVA_01921at 131.898 kb on - strand, within BACOVA_01921at 131.899 kb on + strand, within BACOVA_01921at 131.899 kb on + strand, within BACOVA_01921at 131.899 kb on + strand, within BACOVA_01921at 131.900 kb on - strand, within BACOVA_01921at 131.900 kb on - strand, within BACOVA_01921at 131.909 kb on + strand, within BACOVA_01921at 131.919 kb on + strand, within BACOVA_01921at 131.919 kb on + strand, within BACOVA_01921at 131.920 kb on - strand, within BACOVA_01921at 131.920 kb on - strand, within BACOVA_01921at 131.920 kb on - strand, within BACOVA_01921at 131.921 kb on + strand, within BACOVA_01921at 131.982 kb on + strand, within BACOVA_01921at 131.983 kb on - strand, within BACOVA_01921at 131.983 kb on - strand, within BACOVA_01921at 132.033 kb on - strand, within BACOVA_01921at 132.070 kb on + strand, within BACOVA_01921at 132.073 kb on - strand, within BACOVA_01921at 132.075 kb on - strand, within BACOVA_01921at 132.099 kb on + strand, within BACOVA_01921at 132.114 kb on + strand, within BACOVA_01921at 132.115 kb on - strand, within BACOVA_01921at 132.241 kb on - strandat 132.242 kb on + strandat 132.242 kb on + strandat 132.253 kb on + strandat 132.253 kb on + strandat 132.253 kb on + strandat 132.254 kb on - strandat 132.254 kb on - strandat 132.288 kb on - strandat 132.288 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectic galactan from potato 2.5 mg/mL (C)
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129,940 + BACOVA_01919 0.53 -1.1
129,956 + BACOVA_01919 0.54 -4.2
129,968 - BACOVA_01919 0.55 -1.7
129,968 - BACOVA_01919 0.55 -2.2
129,982 + BACOVA_01919 0.55 -1.4
130,025 - BACOVA_01919 0.57 -1.5
130,025 - BACOVA_01919 0.57 -3.3
130,120 - BACOVA_01919 0.62 -1.5
130,120 - BACOVA_01919 0.62 -2.7
130,123 + BACOVA_01919 0.62 -2.3
130,138 + BACOVA_01919 0.63 -2.9
130,138 + BACOVA_01919 0.63 -1.5
130,139 - BACOVA_01919 0.63 -2.5
130,178 + BACOVA_01919 0.65 -1.9
130,215 + BACOVA_01919 0.67 -1.6
130,227 - BACOVA_01919 0.68 -1.7
130,240 + BACOVA_01919 0.68 -0.5
130,249 + BACOVA_01919 0.69 -1.7
130,351 + BACOVA_01919 0.74 -1.9
130,351 + BACOVA_01919 0.74 -2.4
130,352 - BACOVA_01919 0.74 -3.5
130,352 - BACOVA_01919 0.74 -1.2
130,377 + BACOVA_01919 0.75 +0.3
130,378 - BACOVA_01919 0.75 -1.9
130,378 - BACOVA_01919 0.75 -1.8
130,381 + BACOVA_01919 0.75 -3.4
130,382 - BACOVA_01919 0.75 -3.1
130,391 + BACOVA_01919 0.76 -2.4
130,392 - BACOVA_01919 0.76 -2.6
130,435 - BACOVA_01919 0.78 -3.7
130,468 + BACOVA_01919 0.80 -1.8
130,510 + BACOVA_01919 0.82 -1.9
130,510 + BACOVA_01919 0.82 +0.6
130,511 - BACOVA_01919 0.82 -0.4
130,524 + BACOVA_01919 0.83 +0.5
130,525 - BACOVA_01919 0.83 -2.8
130,557 - BACOVA_01919 0.84 -3.2
130,557 - BACOVA_01919 0.84 -2.3
130,572 + BACOVA_01919 0.85 -2.3
130,641 - BACOVA_01919 0.89 -0.8
130,670 + -0.1
130,671 - -1.6
130,674 + -2.4
130,674 + -0.7
130,674 + -1.7
130,675 - -1.1
130,675 - -2.5
130,683 - -2.1
130,778 - -2.7
130,826 + -2.6
130,826 + -0.2
130,827 - -2.4
130,827 - -1.8
130,835 + -1.7
130,835 + -1.1
130,836 - -3.4
130,837 + +0.2
130,837 + -1.4
130,837 + -1.3
130,838 - -2.6
130,839 + -0.5
130,839 + -1.2
130,839 + -1.4
130,840 - +0.6
130,841 + -1.0
130,884 + -3.2
130,892 - +0.7
130,909 + -0.4
130,915 + +0.4
130,928 + -1.2
130,929 - +0.8
130,930 + -2.2
130,930 + -1.9
130,930 + -2.6
130,931 - +0.2
130,935 - +0.4
130,936 + -3.5
130,936 + -4.7
130,964 + BACOVA_01920 0.12 -0.7
130,984 - BACOVA_01920 0.17 -1.6
131,141 - BACOVA_01920 0.54 -3.4
131,216 - BACOVA_01920 0.72 -2.7
131,217 + BACOVA_01920 0.72 -4.5
131,217 + BACOVA_01920 0.72 -4.8
131,218 - BACOVA_01920 0.72 -2.2
131,243 + BACOVA_01920 0.78 -3.1
131,243 + BACOVA_01920 0.78 -2.0
131,282 + BACOVA_01920 0.88 -1.0
131,283 - BACOVA_01920 0.88 -0.7
131,318 + -2.8
131,318 + -2.9
131,318 + -2.7
131,318 + -2.6
131,318 + -2.7
131,319 - -1.0
131,319 - -2.0
131,322 + -2.7
131,336 + -1.9
131,356 - -5.0
131,374 + -3.8
131,375 - -2.2
131,384 + -2.4
131,397 + -2.5
131,397 + -3.4
131,399 + -0.9
131,400 - -4.6
131,426 - BACOVA_01921 0.11 -1.9
131,504 + BACOVA_01921 0.20 -3.4
131,513 + BACOVA_01921 0.20 -4.1
131,514 - BACOVA_01921 0.21 -3.4
131,547 + BACOVA_01921 0.24 -1.8
131,634 + BACOVA_01921 0.33 -3.9
131,637 - BACOVA_01921 0.33 -1.1
131,677 + BACOVA_01921 0.38 -3.2
131,678 - BACOVA_01921 0.38 -2.4
131,682 + BACOVA_01921 0.38 -4.0
131,683 - BACOVA_01921 0.38 -2.1
131,709 + BACOVA_01921 0.41 -4.2
131,712 + BACOVA_01921 0.41 -5.0
131,712 + BACOVA_01921 0.41 -2.4
131,713 - BACOVA_01921 0.41 -1.4
131,798 + BACOVA_01921 0.50 -1.3
131,798 + BACOVA_01921 0.50 -3.1
131,798 + BACOVA_01921 0.50 -2.4
131,799 - BACOVA_01921 0.50 -1.8
131,827 + BACOVA_01921 0.53 -2.0
131,827 + BACOVA_01921 0.53 -2.6
131,828 - BACOVA_01921 0.53 -2.7
131,832 + BACOVA_01921 0.54 -0.6
131,884 + BACOVA_01921 0.59 -3.4
131,897 + BACOVA_01921 0.61 -2.6
131,897 + BACOVA_01921 0.61 -3.7
131,898 - BACOVA_01921 0.61 -1.8
131,898 - BACOVA_01921 0.61 -3.5
131,899 + BACOVA_01921 0.61 -3.7
131,899 + BACOVA_01921 0.61 -2.7
131,899 + BACOVA_01921 0.61 -3.4
131,900 - BACOVA_01921 0.61 -0.8
131,900 - BACOVA_01921 0.61 -3.2
131,909 + BACOVA_01921 0.62 -4.5
131,919 + BACOVA_01921 0.63 -1.8
131,919 + BACOVA_01921 0.63 -1.0
131,920 - BACOVA_01921 0.63 -2.5
131,920 - BACOVA_01921 0.63 -1.9
131,920 - BACOVA_01921 0.63 -1.6
131,921 + BACOVA_01921 0.63 -0.7
131,982 + BACOVA_01921 0.69 -1.9
131,983 - BACOVA_01921 0.70 -0.7
131,983 - BACOVA_01921 0.70 -2.6
132,033 - BACOVA_01921 0.75 -1.1
132,070 + BACOVA_01921 0.79 -3.2
132,073 - BACOVA_01921 0.79 -4.1
132,075 - BACOVA_01921 0.79 -1.2
132,099 + BACOVA_01921 0.82 -2.4
132,114 + BACOVA_01921 0.83 -1.3
132,115 - BACOVA_01921 0.83 -3.6
132,241 - -2.1
132,242 + -2.1
132,242 + -3.8
132,253 + -1.7
132,253 + -2.7
132,253 + -1.9
132,254 - -3.9
132,254 - -3.1
132,288 - -0.0
132,288 - -2.2

Or see this region's nucleotide sequence