Experiment: Pectic galactan from potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00710 and BACOVA_00711 are separated by 29 nucleotides BACOVA_00711 and BACOVA_00712 are separated by 108 nucleotides BACOVA_00712 and BACOVA_00713 are separated by 94 nucleotides
BACOVA_00710: BACOVA_00710 - transcriptional regulator, AraC family, at 82,632 to 83,483
_00710
BACOVA_00711: BACOVA_00711 - hypothetical protein, at 83,513 to 83,629
_00711
BACOVA_00712: BACOVA_00712 - hypothetical protein, at 83,738 to 85,300
_00712
BACOVA_00713: BACOVA_00713 - hypothetical protein, at 85,395 to 85,769
_00713
Position (kb) 83
84
85
86 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 82.797 kb on - strand, within BACOVA_00710 at 82.804 kb on - strand, within BACOVA_00710 at 82.804 kb on - strand, within BACOVA_00710 at 82.804 kb on - strand, within BACOVA_00710 at 82.836 kb on - strand, within BACOVA_00710 at 82.836 kb on - strand, within BACOVA_00710 at 82.838 kb on + strand, within BACOVA_00710 at 82.838 kb on + strand, within BACOVA_00710 at 82.839 kb on - strand, within BACOVA_00710 at 82.839 kb on - strand, within BACOVA_00710 at 82.839 kb on - strand, within BACOVA_00710 at 82.884 kb on + strand, within BACOVA_00710 at 82.884 kb on + strand, within BACOVA_00710 at 82.885 kb on - strand, within BACOVA_00710 at 82.885 kb on - strand, within BACOVA_00710 at 82.885 kb on - strand, within BACOVA_00710 at 82.903 kb on + strand, within BACOVA_00710 at 82.917 kb on + strand, within BACOVA_00710 at 82.990 kb on + strand, within BACOVA_00710 at 83.013 kb on + strand, within BACOVA_00710 at 83.018 kb on + strand, within BACOVA_00710 at 83.018 kb on + strand, within BACOVA_00710 at 83.018 kb on + strand, within BACOVA_00710 at 83.019 kb on - strand, within BACOVA_00710 at 83.021 kb on + strand, within BACOVA_00710 at 83.021 kb on + strand, within BACOVA_00710 at 83.021 kb on + strand, within BACOVA_00710 at 83.022 kb on - strand, within BACOVA_00710 at 83.023 kb on + strand, within BACOVA_00710 at 83.023 kb on + strand, within BACOVA_00710 at 83.024 kb on - strand, within BACOVA_00710 at 83.026 kb on - strand, within BACOVA_00710 at 83.036 kb on + strand, within BACOVA_00710 at 83.037 kb on - strand, within BACOVA_00710 at 83.040 kb on - strand, within BACOVA_00710 at 83.040 kb on - strand, within BACOVA_00710 at 83.040 kb on - strand, within BACOVA_00710 at 83.082 kb on + strand, within BACOVA_00710 at 83.095 kb on + strand, within BACOVA_00710 at 83.096 kb on - strand, within BACOVA_00710 at 83.107 kb on - strand, within BACOVA_00710 at 83.160 kb on + strand, within BACOVA_00710 at 83.161 kb on - strand, within BACOVA_00710 at 83.190 kb on - strand, within BACOVA_00710 at 83.190 kb on - strand, within BACOVA_00710 at 83.200 kb on - strand, within BACOVA_00710 at 83.200 kb on - strand, within BACOVA_00710 at 83.203 kb on + strand, within BACOVA_00710 at 83.204 kb on - strand, within BACOVA_00710 at 83.228 kb on - strand, within BACOVA_00710 at 83.257 kb on - strand, within BACOVA_00710 at 83.257 kb on - strand, within BACOVA_00710 at 83.267 kb on + strand, within BACOVA_00710 at 83.268 kb on - strand, within BACOVA_00710 at 83.279 kb on + strand, within BACOVA_00710 at 83.304 kb on + strand, within BACOVA_00710 at 83.355 kb on + strand, within BACOVA_00710 at 83.359 kb on - strand, within BACOVA_00710 at 83.418 kb on - strand at 83.421 kb on - strand at 83.421 kb on - strand at 83.423 kb on + strand at 83.424 kb on - strand at 83.424 kb on - strand at 83.462 kb on + strand at 83.475 kb on - strand at 83.505 kb on - strand at 83.522 kb on - strand at 83.522 kb on - strand at 83.588 kb on - strand, within BACOVA_00711 at 83.639 kb on + strand at 83.639 kb on + strand at 83.640 kb on - strand at 83.642 kb on - strand at 83.650 kb on - strand at 83.650 kb on - strand at 83.694 kb on + strand at 83.694 kb on + strand at 83.695 kb on - strand at 83.695 kb on - strand at 83.713 kb on + strand at 83.716 kb on + strand at 83.716 kb on + strand at 83.721 kb on - strand at 83.756 kb on + strand at 83.772 kb on + strand at 83.780 kb on - strand at 83.794 kb on + strand at 83.794 kb on + strand at 83.803 kb on + strand at 83.803 kb on + strand at 83.829 kb on - strand at 83.858 kb on + strand at 83.859 kb on - strand at 83.859 kb on - strand at 83.859 kb on - strand at 83.866 kb on + strand at 83.867 kb on - strand at 83.891 kb on - strand at 83.906 kb on - strand, within BACOVA_00712 at 83.939 kb on - strand, within BACOVA_00712 at 83.950 kb on + strand, within BACOVA_00712 at 83.991 kb on + strand, within BACOVA_00712 at 84.005 kb on - strand, within BACOVA_00712 at 84.035 kb on - strand, within BACOVA_00712 at 84.036 kb on + strand, within BACOVA_00712 at 84.094 kb on + strand, within BACOVA_00712 at 84.094 kb on + strand, within BACOVA_00712 at 84.095 kb on - strand, within BACOVA_00712 at 84.109 kb on + strand, within BACOVA_00712 at 84.118 kb on + strand, within BACOVA_00712 at 84.136 kb on + strand, within BACOVA_00712 at 84.137 kb on - strand, within BACOVA_00712 at 84.139 kb on + strand, within BACOVA_00712 at 84.140 kb on - strand, within BACOVA_00712 at 84.142 kb on + strand, within BACOVA_00712 at 84.156 kb on + strand, within BACOVA_00712 at 84.174 kb on + strand, within BACOVA_00712 at 84.187 kb on - strand, within BACOVA_00712 at 84.193 kb on + strand, within BACOVA_00712 at 84.220 kb on + strand, within BACOVA_00712 at 84.268 kb on + strand, within BACOVA_00712 at 84.287 kb on - strand, within BACOVA_00712 at 84.309 kb on + strand, within BACOVA_00712 at 84.310 kb on - strand, within BACOVA_00712 at 84.370 kb on + strand, within BACOVA_00712 at 84.391 kb on + strand, within BACOVA_00712 at 84.451 kb on + strand, within BACOVA_00712 at 84.451 kb on + strand, within BACOVA_00712 at 84.452 kb on - strand, within BACOVA_00712 at 84.452 kb on - strand, within BACOVA_00712 at 84.472 kb on + strand, within BACOVA_00712 at 84.473 kb on - strand, within BACOVA_00712 at 84.496 kb on + strand, within BACOVA_00712 at 84.515 kb on + strand, within BACOVA_00712 at 84.516 kb on - strand, within BACOVA_00712 at 84.584 kb on - strand, within BACOVA_00712 at 84.589 kb on + strand, within BACOVA_00712 at 84.610 kb on - strand, within BACOVA_00712 at 84.630 kb on + strand, within BACOVA_00712 at 84.630 kb on + strand, within BACOVA_00712 at 84.630 kb on + strand, within BACOVA_00712 at 84.632 kb on + strand, within BACOVA_00712 at 84.633 kb on - strand, within BACOVA_00712 at 84.633 kb on - strand, within BACOVA_00712 at 84.633 kb on - strand, within BACOVA_00712 at 84.633 kb on - strand, within BACOVA_00712 at 84.634 kb on + strand, within BACOVA_00712 at 84.634 kb on + strand, within BACOVA_00712 at 84.635 kb on - strand, within BACOVA_00712 at 84.670 kb on + strand, within BACOVA_00712 at 84.699 kb on + strand, within BACOVA_00712 at 84.710 kb on - strand, within BACOVA_00712 at 84.712 kb on + strand, within BACOVA_00712 at 84.712 kb on + strand, within BACOVA_00712 at 84.751 kb on - strand, within BACOVA_00712 at 84.763 kb on + strand, within BACOVA_00712 at 84.789 kb on + strand, within BACOVA_00712 at 84.826 kb on + strand, within BACOVA_00712 at 84.827 kb on - strand, within BACOVA_00712 at 84.833 kb on - strand, within BACOVA_00712 at 84.841 kb on + strand, within BACOVA_00712 at 84.842 kb on - strand, within BACOVA_00712 at 84.852 kb on - strand, within BACOVA_00712 at 84.852 kb on - strand, within BACOVA_00712 at 84.863 kb on - strand, within BACOVA_00712 at 84.870 kb on + strand, within BACOVA_00712 at 84.883 kb on + strand, within BACOVA_00712 at 84.883 kb on + strand, within BACOVA_00712 at 84.884 kb on - strand, within BACOVA_00712 at 84.887 kb on + strand, within BACOVA_00712 at 84.887 kb on + strand, within BACOVA_00712 at 84.888 kb on - strand, within BACOVA_00712 at 84.906 kb on - strand, within BACOVA_00712 at 84.908 kb on + strand, within BACOVA_00712 at 84.909 kb on - strand, within BACOVA_00712 at 84.910 kb on + strand, within BACOVA_00712 at 84.910 kb on + strand, within BACOVA_00712 at 84.911 kb on - strand, within BACOVA_00712 at 84.911 kb on - strand, within BACOVA_00712 at 84.911 kb on - strand, within BACOVA_00712 at 84.959 kb on - strand, within BACOVA_00712 at 84.973 kb on + strand, within BACOVA_00712 at 84.988 kb on + strand, within BACOVA_00712 at 85.033 kb on + strand, within BACOVA_00712 at 85.034 kb on - strand, within BACOVA_00712 at 85.036 kb on + strand, within BACOVA_00712 at 85.039 kb on + strand, within BACOVA_00712 at 85.046 kb on + strand, within BACOVA_00712 at 85.079 kb on - strand, within BACOVA_00712 at 85.079 kb on - strand, within BACOVA_00712 at 85.082 kb on - strand, within BACOVA_00712 at 85.082 kb on - strand, within BACOVA_00712 at 85.085 kb on - strand, within BACOVA_00712 at 85.138 kb on + strand, within BACOVA_00712 at 85.138 kb on + strand, within BACOVA_00712 at 85.139 kb on - strand, within BACOVA_00712 at 85.144 kb on + strand at 85.144 kb on + strand at 85.145 kb on - strand at 85.147 kb on + strand at 85.148 kb on - strand at 85.153 kb on + strand at 85.205 kb on - strand at 85.209 kb on + strand at 85.210 kb on - strand at 85.301 kb on + strand at 85.302 kb on - strand at 85.305 kb on + strand at 85.306 kb on - strand at 85.307 kb on + strand at 85.308 kb on - strand at 85.313 kb on - strand at 85.317 kb on - strand at 85.317 kb on - strand at 85.317 kb on - strand at 85.319 kb on - strand at 85.325 kb on - strand at 85.325 kb on - strand at 85.351 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectic galactan from potato 2.5 mg/mL (C) remove 82,797 - BACOVA_00710 0.19 +0.5 82,804 - BACOVA_00710 0.20 +1.8 82,804 - BACOVA_00710 0.20 +0.2 82,804 - BACOVA_00710 0.20 -0.0 82,836 - BACOVA_00710 0.24 +0.3 82,836 - BACOVA_00710 0.24 +0.4 82,838 + BACOVA_00710 0.24 +0.8 82,838 + BACOVA_00710 0.24 -0.2 82,839 - BACOVA_00710 0.24 +0.9 82,839 - BACOVA_00710 0.24 -0.5 82,839 - BACOVA_00710 0.24 -1.4 82,884 + BACOVA_00710 0.30 -0.1 82,884 + BACOVA_00710 0.30 -0.4 82,885 - BACOVA_00710 0.30 -0.4 82,885 - BACOVA_00710 0.30 -0.1 82,885 - BACOVA_00710 0.30 -0.8 82,903 + BACOVA_00710 0.32 +0.5 82,917 + BACOVA_00710 0.33 -1.7 82,990 + BACOVA_00710 0.42 -0.5 83,013 + BACOVA_00710 0.45 -0.3 83,018 + BACOVA_00710 0.45 -1.4 83,018 + BACOVA_00710 0.45 -0.7 83,018 + BACOVA_00710 0.45 -1.2 83,019 - BACOVA_00710 0.45 +1.7 83,021 + BACOVA_00710 0.46 -0.4 83,021 + BACOVA_00710 0.46 -0.2 83,021 + BACOVA_00710 0.46 -0.4 83,022 - BACOVA_00710 0.46 -0.2 83,023 + BACOVA_00710 0.46 -0.5 83,023 + BACOVA_00710 0.46 -1.2 83,024 - BACOVA_00710 0.46 -0.5 83,026 - BACOVA_00710 0.46 +1.6 83,036 + BACOVA_00710 0.47 +0.2 83,037 - BACOVA_00710 0.48 -1.8 83,040 - BACOVA_00710 0.48 -0.1 83,040 - BACOVA_00710 0.48 +0.3 83,040 - BACOVA_00710 0.48 +1.3 83,082 + BACOVA_00710 0.53 +0.9 83,095 + BACOVA_00710 0.54 +0.3 83,096 - BACOVA_00710 0.54 +0.4 83,107 - BACOVA_00710 0.56 +0.1 83,160 + BACOVA_00710 0.62 +0.7 83,161 - BACOVA_00710 0.62 -0.7 83,190 - BACOVA_00710 0.65 +0.3 83,190 - BACOVA_00710 0.65 +0.7 83,200 - BACOVA_00710 0.67 -0.6 83,200 - BACOVA_00710 0.67 -0.4 83,203 + BACOVA_00710 0.67 -0.7 83,204 - BACOVA_00710 0.67 -1.3 83,228 - BACOVA_00710 0.70 +0.9 83,257 - BACOVA_00710 0.73 +0.3 83,257 - BACOVA_00710 0.73 -0.1 83,267 + BACOVA_00710 0.75 -1.0 83,268 - BACOVA_00710 0.75 -0.1 83,279 + BACOVA_00710 0.76 -0.5 83,304 + BACOVA_00710 0.79 +1.1 83,355 + BACOVA_00710 0.85 +0.9 83,359 - BACOVA_00710 0.85 -0.4 83,418 - +1.3 83,421 - -0.4 83,421 - -0.8 83,423 + +0.5 83,424 - +0.8 83,424 - +0.9 83,462 + -1.9 83,475 - +0.2 83,505 - +0.0 83,522 - -1.8 83,522 - -1.1 83,588 - BACOVA_00711 0.64 +0.1 83,639 + -0.5 83,639 + +0.1 83,640 - -1.5 83,642 - -1.6 83,650 - -1.2 83,650 - +0.6 83,694 + +0.2 83,694 + -3.1 83,695 - -0.1 83,695 - -0.8 83,713 + -1.2 83,716 + -0.7 83,716 + -1.1 83,721 - -1.0 83,756 + -0.7 83,772 + +0.9 83,780 - -0.5 83,794 + -0.5 83,794 + -0.1 83,803 + -0.0 83,803 + -1.6 83,829 - -0.4 83,858 + -0.6 83,859 - +0.6 83,859 - -1.1 83,859 - +0.7 83,866 + +0.3 83,867 - -0.9 83,891 - -1.4 83,906 - BACOVA_00712 0.11 -0.5 83,939 - BACOVA_00712 0.13 -0.9 83,950 + BACOVA_00712 0.14 +0.3 83,991 + BACOVA_00712 0.16 -0.3 84,005 - BACOVA_00712 0.17 -0.8 84,035 - BACOVA_00712 0.19 -2.2 84,036 + BACOVA_00712 0.19 +0.1 84,094 + BACOVA_00712 0.23 +0.9 84,094 + BACOVA_00712 0.23 -0.7 84,095 - BACOVA_00712 0.23 -0.3 84,109 + BACOVA_00712 0.24 -0.3 84,118 + BACOVA_00712 0.24 -0.0 84,136 + BACOVA_00712 0.25 +0.3 84,137 - BACOVA_00712 0.26 -1.1 84,139 + BACOVA_00712 0.26 -0.3 84,140 - BACOVA_00712 0.26 +1.0 84,142 + BACOVA_00712 0.26 -0.2 84,156 + BACOVA_00712 0.27 -0.8 84,174 + BACOVA_00712 0.28 -0.9 84,187 - BACOVA_00712 0.29 +1.0 84,193 + BACOVA_00712 0.29 +1.9 84,220 + BACOVA_00712 0.31 +0.0 84,268 + BACOVA_00712 0.34 +0.1 84,287 - BACOVA_00712 0.35 +0.8 84,309 + BACOVA_00712 0.37 -0.4 84,310 - BACOVA_00712 0.37 +0.7 84,370 + BACOVA_00712 0.40 -1.4 84,391 + BACOVA_00712 0.42 -0.9 84,451 + BACOVA_00712 0.46 +1.6 84,451 + BACOVA_00712 0.46 +0.2 84,452 - BACOVA_00712 0.46 -1.7 84,452 - BACOVA_00712 0.46 +0.1 84,472 + BACOVA_00712 0.47 -0.3 84,473 - BACOVA_00712 0.47 -0.3 84,496 + BACOVA_00712 0.48 -0.5 84,515 + BACOVA_00712 0.50 +0.0 84,516 - BACOVA_00712 0.50 +1.1 84,584 - BACOVA_00712 0.54 +0.1 84,589 + BACOVA_00712 0.54 -1.1 84,610 - BACOVA_00712 0.56 +0.8 84,630 + BACOVA_00712 0.57 -2.0 84,630 + BACOVA_00712 0.57 -0.1 84,630 + BACOVA_00712 0.57 -1.8 84,632 + BACOVA_00712 0.57 +1.2 84,633 - BACOVA_00712 0.57 +0.5 84,633 - BACOVA_00712 0.57 +0.0 84,633 - BACOVA_00712 0.57 -0.3 84,633 - BACOVA_00712 0.57 -1.4 84,634 + BACOVA_00712 0.57 -0.5 84,634 + BACOVA_00712 0.57 -0.7 84,635 - BACOVA_00712 0.57 +0.3 84,670 + BACOVA_00712 0.60 -0.6 84,699 + BACOVA_00712 0.61 +0.2 84,710 - BACOVA_00712 0.62 +0.2 84,712 + BACOVA_00712 0.62 -0.8 84,712 + BACOVA_00712 0.62 +1.0 84,751 - BACOVA_00712 0.65 -1.3 84,763 + BACOVA_00712 0.66 +0.1 84,789 + BACOVA_00712 0.67 -0.6 84,826 + BACOVA_00712 0.70 -1.7 84,827 - BACOVA_00712 0.70 +0.0 84,833 - BACOVA_00712 0.70 +0.5 84,841 + BACOVA_00712 0.71 -0.0 84,842 - BACOVA_00712 0.71 -0.7 84,852 - BACOVA_00712 0.71 -2.1 84,852 - BACOVA_00712 0.71 -0.4 84,863 - BACOVA_00712 0.72 -1.2 84,870 + BACOVA_00712 0.72 -1.2 84,883 + BACOVA_00712 0.73 +1.5 84,883 + BACOVA_00712 0.73 +0.2 84,884 - BACOVA_00712 0.73 +0.3 84,887 + BACOVA_00712 0.74 -0.3 84,887 + BACOVA_00712 0.74 -0.4 84,888 - BACOVA_00712 0.74 -0.2 84,906 - BACOVA_00712 0.75 +0.6 84,908 + BACOVA_00712 0.75 +0.2 84,909 - BACOVA_00712 0.75 -0.8 84,910 + BACOVA_00712 0.75 -0.1 84,910 + BACOVA_00712 0.75 -0.5 84,911 - BACOVA_00712 0.75 -1.7 84,911 - BACOVA_00712 0.75 -1.2 84,911 - BACOVA_00712 0.75 -1.3 84,959 - BACOVA_00712 0.78 +0.4 84,973 + BACOVA_00712 0.79 -0.8 84,988 + BACOVA_00712 0.80 -1.0 85,033 + BACOVA_00712 0.83 +0.3 85,034 - BACOVA_00712 0.83 -0.8 85,036 + BACOVA_00712 0.83 -0.4 85,039 + BACOVA_00712 0.83 -0.9 85,046 + BACOVA_00712 0.84 +1.6 85,079 - BACOVA_00712 0.86 -0.2 85,079 - BACOVA_00712 0.86 +0.0 85,082 - BACOVA_00712 0.86 +0.8 85,082 - BACOVA_00712 0.86 -0.1 85,085 - BACOVA_00712 0.86 -0.5 85,138 + BACOVA_00712 0.90 -2.6 85,138 + BACOVA_00712 0.90 +0.1 85,139 - BACOVA_00712 0.90 -1.5 85,144 + +0.8 85,144 + -1.1 85,145 - +0.3 85,147 + -0.6 85,148 - -0.5 85,153 + -1.1 85,205 - -1.1 85,209 + +0.3 85,210 - -0.7 85,301 + +0.2 85,302 - +1.0 85,305 + -0.1 85,306 - +1.3 85,307 + +0.0 85,308 - +0.6 85,313 - -1.9 85,317 - -1.3 85,317 - +0.3 85,317 - +0.7 85,319 - +0.5 85,325 - +0.6 85,325 - -1.2 85,351 - -0.4
Or see this region's nucleotide sequence