Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00673

Experiment: Pectic galactan from potato 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00671 and BACOVA_00672 overlap by 4 nucleotidesBACOVA_00672 and BACOVA_00673 are separated by 39 nucleotidesBACOVA_00673 and BACOVA_00674 are separated by 87 nucleotides BACOVA_00671: BACOVA_00671 - NOL1/NOP2/sun family protein, at 31,645 to 33,159 _00671 BACOVA_00672: BACOVA_00672 - hypothetical protein, at 33,156 to 33,959 _00672 BACOVA_00673: BACOVA_00673 - hypothetical protein, at 33,999 to 34,157 _00673 BACOVA_00674: BACOVA_00674 - outer membrane efflux protein, at 34,245 to 35,429 _00674 Position (kb) 33 34 35Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 33.033 kb on + strandat 33.034 kb on - strandat 33.034 kb on - strandat 33.113 kb on - strandat 33.113 kb on - strandat 33.113 kb on - strandat 33.131 kb on - strandat 33.145 kb on + strandat 33.145 kb on + strandat 33.145 kb on + strandat 33.157 kb on + strandat 33.256 kb on + strand, within BACOVA_00672at 33.256 kb on + strand, within BACOVA_00672at 33.257 kb on - strand, within BACOVA_00672at 33.350 kb on - strand, within BACOVA_00672at 33.364 kb on - strand, within BACOVA_00672at 33.366 kb on + strand, within BACOVA_00672at 33.367 kb on - strand, within BACOVA_00672at 33.399 kb on - strand, within BACOVA_00672at 33.420 kb on + strand, within BACOVA_00672at 33.420 kb on + strand, within BACOVA_00672at 33.604 kb on - strand, within BACOVA_00672at 33.604 kb on - strand, within BACOVA_00672at 33.616 kb on + strand, within BACOVA_00672at 33.616 kb on + strand, within BACOVA_00672at 33.617 kb on - strand, within BACOVA_00672at 33.617 kb on - strand, within BACOVA_00672at 33.624 kb on + strand, within BACOVA_00672at 33.647 kb on + strand, within BACOVA_00672at 33.667 kb on - strand, within BACOVA_00672at 33.709 kb on + strand, within BACOVA_00672at 33.710 kb on - strand, within BACOVA_00672at 33.740 kb on - strand, within BACOVA_00672at 33.740 kb on - strand, within BACOVA_00672at 33.746 kb on + strand, within BACOVA_00672at 33.747 kb on - strand, within BACOVA_00672at 33.760 kb on - strand, within BACOVA_00672at 33.823 kb on + strand, within BACOVA_00672at 33.824 kb on - strand, within BACOVA_00672at 33.824 kb on - strand, within BACOVA_00672at 33.853 kb on + strand, within BACOVA_00672at 33.873 kb on + strand, within BACOVA_00672at 33.874 kb on - strand, within BACOVA_00672at 33.933 kb on + strandat 33.933 kb on + strandat 33.934 kb on - strandat 33.941 kb on + strandat 33.954 kb on + strandat 33.963 kb on + strandat 33.986 kb on + strandat 33.987 kb on - strandat 34.015 kb on + strand, within BACOVA_00673at 34.016 kb on - strand, within BACOVA_00673at 34.020 kb on + strand, within BACOVA_00673at 34.021 kb on - strand, within BACOVA_00673at 34.033 kb on + strand, within BACOVA_00673at 34.069 kb on + strand, within BACOVA_00673at 34.070 kb on - strand, within BACOVA_00673at 34.070 kb on - strand, within BACOVA_00673at 34.107 kb on + strand, within BACOVA_00673at 34.108 kb on - strand, within BACOVA_00673at 34.109 kb on + strand, within BACOVA_00673at 34.109 kb on + strand, within BACOVA_00673at 34.110 kb on - strand, within BACOVA_00673at 34.114 kb on - strand, within BACOVA_00673at 34.114 kb on - strand, within BACOVA_00673at 34.122 kb on - strand, within BACOVA_00673at 34.122 kb on - strand, within BACOVA_00673at 34.124 kb on + strand, within BACOVA_00673at 34.125 kb on - strand, within BACOVA_00673at 34.125 kb on - strand, within BACOVA_00673at 34.160 kb on + strandat 34.161 kb on - strandat 34.167 kb on + strandat 34.167 kb on + strandat 34.168 kb on - strandat 34.168 kb on - strandat 34.168 kb on - strandat 34.168 kb on - strandat 34.171 kb on + strandat 34.177 kb on + strandat 34.177 kb on + strandat 34.177 kb on + strandat 34.178 kb on - strandat 34.179 kb on + strandat 34.181 kb on + strandat 34.193 kb on - strandat 34.199 kb on + strandat 34.200 kb on - strandat 34.224 kb on + strandat 34.224 kb on + strandat 34.225 kb on - strandat 34.235 kb on + strandat 34.235 kb on + strandat 34.235 kb on + strandat 34.239 kb on + strandat 34.240 kb on - strandat 34.242 kb on + strandat 34.243 kb on - strandat 34.243 kb on - strandat 34.246 kb on + strandat 34.247 kb on - strandat 34.249 kb on - strandat 34.249 kb on - strandat 34.249 kb on - strandat 34.286 kb on - strandat 34.335 kb on + strandat 34.348 kb on + strandat 34.428 kb on - strand, within BACOVA_00674at 34.428 kb on - strand, within BACOVA_00674at 34.430 kb on - strand, within BACOVA_00674at 34.508 kb on + strand, within BACOVA_00674at 34.599 kb on + strand, within BACOVA_00674at 34.674 kb on - strand, within BACOVA_00674at 34.716 kb on + strand, within BACOVA_00674at 34.787 kb on + strand, within BACOVA_00674at 34.976 kb on + strand, within BACOVA_00674at 35.067 kb on + strand, within BACOVA_00674at 35.139 kb on - strand, within BACOVA_00674

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectic galactan from potato 2.5 mg/mL (C)
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33,033 + -0.3
33,034 - +0.9
33,034 - +0.6
33,113 - -1.4
33,113 - +0.1
33,113 - +0.6
33,131 - +0.6
33,145 + +1.0
33,145 + +0.5
33,145 + -0.4
33,157 + +0.2
33,256 + BACOVA_00672 0.12 -1.2
33,256 + BACOVA_00672 0.12 -0.2
33,257 - BACOVA_00672 0.13 -0.6
33,350 - BACOVA_00672 0.24 -0.4
33,364 - BACOVA_00672 0.26 +0.2
33,366 + BACOVA_00672 0.26 +0.1
33,367 - BACOVA_00672 0.26 +0.1
33,399 - BACOVA_00672 0.30 -0.9
33,420 + BACOVA_00672 0.33 +0.3
33,420 + BACOVA_00672 0.33 -0.2
33,604 - BACOVA_00672 0.56 -2.2
33,604 - BACOVA_00672 0.56 -1.2
33,616 + BACOVA_00672 0.57 -0.0
33,616 + BACOVA_00672 0.57 +0.1
33,617 - BACOVA_00672 0.57 -1.4
33,617 - BACOVA_00672 0.57 -0.5
33,624 + BACOVA_00672 0.58 -0.6
33,647 + BACOVA_00672 0.61 -0.9
33,667 - BACOVA_00672 0.64 +0.3
33,709 + BACOVA_00672 0.69 -2.2
33,710 - BACOVA_00672 0.69 +0.3
33,740 - BACOVA_00672 0.73 +0.0
33,740 - BACOVA_00672 0.73 +0.1
33,746 + BACOVA_00672 0.73 -1.2
33,747 - BACOVA_00672 0.74 -3.2
33,760 - BACOVA_00672 0.75 +0.6
33,823 + BACOVA_00672 0.83 +0.2
33,824 - BACOVA_00672 0.83 +0.4
33,824 - BACOVA_00672 0.83 +0.3
33,853 + BACOVA_00672 0.87 -1.4
33,873 + BACOVA_00672 0.89 -1.5
33,874 - BACOVA_00672 0.89 -1.6
33,933 + +0.3
33,933 + -0.4
33,934 - -0.1
33,941 + -1.2
33,954 + -0.2
33,963 + -1.3
33,986 + +0.2
33,987 - -0.1
34,015 + BACOVA_00673 0.10 +0.4
34,016 - BACOVA_00673 0.11 +0.9
34,020 + BACOVA_00673 0.13 +0.1
34,021 - BACOVA_00673 0.14 -1.1
34,033 + BACOVA_00673 0.21 -0.3
34,069 + BACOVA_00673 0.44 -1.4
34,070 - BACOVA_00673 0.45 +0.3
34,070 - BACOVA_00673 0.45 +2.6
34,107 + BACOVA_00673 0.68 -0.3
34,108 - BACOVA_00673 0.69 -0.1
34,109 + BACOVA_00673 0.69 -1.6
34,109 + BACOVA_00673 0.69 -0.5
34,110 - BACOVA_00673 0.70 -0.5
34,114 - BACOVA_00673 0.72 +0.3
34,114 - BACOVA_00673 0.72 +0.9
34,122 - BACOVA_00673 0.77 -0.3
34,122 - BACOVA_00673 0.77 -0.8
34,124 + BACOVA_00673 0.79 -0.3
34,125 - BACOVA_00673 0.79 -1.2
34,125 - BACOVA_00673 0.79 +1.6
34,160 + -1.3
34,161 - -1.1
34,167 + +0.2
34,167 + -0.4
34,168 - -0.3
34,168 - -1.2
34,168 - -1.1
34,168 - +0.1
34,171 + +0.3
34,177 + +0.5
34,177 + +0.3
34,177 + -1.1
34,178 - -0.2
34,179 + +0.9
34,181 + -0.4
34,193 - +0.1
34,199 + -0.4
34,200 - +0.6
34,224 + +1.3
34,224 + -0.4
34,225 - +1.0
34,235 + +0.8
34,235 + -0.7
34,235 + -0.3
34,239 + -1.2
34,240 - +0.3
34,242 + -0.7
34,243 - -1.1
34,243 - -1.9
34,246 + +0.1
34,247 - -0.5
34,249 - +0.2
34,249 - -0.2
34,249 - -0.4
34,286 - +0.6
34,335 + -1.3
34,348 + -0.1
34,428 - BACOVA_00674 0.15 -1.9
34,428 - BACOVA_00674 0.15 -0.8
34,430 - BACOVA_00674 0.16 +0.2
34,508 + BACOVA_00674 0.22 -2.1
34,599 + BACOVA_00674 0.30 -0.7
34,674 - BACOVA_00674 0.36 -0.9
34,716 + BACOVA_00674 0.40 -0.3
34,787 + BACOVA_00674 0.46 -0.3
34,976 + BACOVA_00674 0.62 -1.2
35,067 + BACOVA_00674 0.69 -0.7
35,139 - BACOVA_00674 0.75 -0.9

Or see this region's nucleotide sequence