Experiment: Ying_AminoAcid20 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF521 and GFF522 are separated by 24 nucleotides GFF522 and GFF523 are separated by 136 nucleotides GFF523 and GFF524 are separated by 5 nucleotides GFF524 and GFF525 overlap by 4 nucleotides
GFF521 - Glutamate Aspartate transport system permease protein GltK (TC 3.A.1.3.4), at 188,891 to 189,562
GFF521
GFF522 - Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4), at 189,587 to 190,324
GFF522
GFF523 - Dihydroorotase (EC 3.5.2.3), at 190,461 to 191,507
GFF523
GFF524 - probable putative transmembrane protein, at 191,513 to 192,268
GFF524
GFF525 - glutamine synthetase family protein, at 192,265 to 193,650
GFF525
Position (kb) 190
191
192 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 189.506 kb on + strand at 189.506 kb on + strand at 189.506 kb on + strand at 189.507 kb on - strand at 189.507 kb on - strand at 189.555 kb on + strand at 190.322 kb on + strand at 190.322 kb on + strand at 190.481 kb on + strand at 190.481 kb on + strand at 190.481 kb on + strand at 190.701 kb on + strand, within GFF523 at 190.701 kb on + strand, within GFF523 at 190.702 kb on - strand, within GFF523 at 190.830 kb on + strand, within GFF523 at 191.019 kb on + strand, within GFF523 at 191.077 kb on - strand, within GFF523 at 191.118 kb on + strand, within GFF523 at 191.119 kb on - strand, within GFF523 at 191.122 kb on - strand, within GFF523 at 191.295 kb on + strand, within GFF523 at 191.295 kb on + strand, within GFF523 at 191.295 kb on + strand, within GFF523 at 191.296 kb on - strand, within GFF523 at 191.296 kb on - strand, within GFF523 at 191.296 kb on - strand, within GFF523 at 191.370 kb on + strand, within GFF523 at 191.371 kb on - strand, within GFF523 at 191.679 kb on - strand, within GFF524 at 191.679 kb on - strand, within GFF524 at 191.679 kb on - strand, within GFF524 at 191.679 kb on - strand, within GFF524 at 192.023 kb on + strand, within GFF524 at 192.024 kb on - strand, within GFF524 at 192.206 kb on + strand at 192.209 kb on + strand at 192.209 kb on + strand at 192.210 kb on - strand at 192.210 kb on - strand at 192.210 kb on - strand at 192.493 kb on + strand, within GFF525 at 192.494 kb on - strand, within GFF525 at 192.499 kb on + strand, within GFF525 at 192.500 kb on - strand, within GFF525 at 192.500 kb on - strand, within GFF525
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 1 remove 189,506 + -1.1 189,506 + -1.1 189,506 + -1.2 189,507 - -1.2 189,507 - +0.8 189,555 + +0.4 190,322 + -0.3 190,322 + -0.5 190,481 + -2.5 190,481 + -0.0 190,481 + -3.2 190,701 + GFF523 0.23 -0.8 190,701 + GFF523 0.23 -2.8 190,702 - GFF523 0.23 -2.3 190,830 + GFF523 0.35 -3.5 191,019 + GFF523 0.53 -3.5 191,077 - GFF523 0.59 -2.8 191,118 + GFF523 0.63 -2.0 191,119 - GFF523 0.63 -2.8 191,122 - GFF523 0.63 -3.5 191,295 + GFF523 0.80 -1.3 191,295 + GFF523 0.80 -3.0 191,295 + GFF523 0.80 -4.0 191,296 - GFF523 0.80 -2.4 191,296 - GFF523 0.80 -4.3 191,296 - GFF523 0.80 -1.5 191,370 + GFF523 0.87 -1.0 191,371 - GFF523 0.87 -0.8 191,679 - GFF524 0.22 -1.2 191,679 - GFF524 0.22 -0.3 191,679 - GFF524 0.22 -0.0 191,679 - GFF524 0.22 -0.3 192,023 + GFF524 0.67 -0.2 192,024 - GFF524 0.68 -0.5 192,206 + +0.5 192,209 + -0.1 192,209 + +0.2 192,210 - -0.5 192,210 - +0.2 192,210 - +0.8 192,493 + GFF525 0.16 -0.3 192,494 - GFF525 0.17 +0.2 192,499 + GFF525 0.17 -1.1 192,500 - GFF525 0.17 +1.1 192,500 - GFF525 0.17 -1.7
Or see this region's nucleotide sequence