Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4979

Experiment: Ying_AminoAcid20 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 1
1,995,105	+		GFF4978	0.13	+0.7
1,995,106	-		GFF4978	0.13	-0.2
1,995,106	-		GFF4978	0.13	+0.3
1,995,106	-		GFF4978	0.13	-0.2
1,995,106	-		GFF4978	0.13	+0.1
1,995,106	-		GFF4978	0.13	-0.6
1,995,150	+		GFF4978	0.17	+0.4
1,995,151	-		GFF4978	0.17	-0.7
1,995,151	-		GFF4978	0.17	+0.8
1,995,151	-		GFF4978	0.17	+0.5
1,995,151	-		GFF4978	0.17	+1.0
1,995,151	-		GFF4978	0.17	+0.4
1,995,426	+		GFF4978	0.43	+1.5
1,995,427	-		GFF4978	0.43	-0.0
1,995,513	+		GFF4978	0.51	-0.7
1,995,513	+		GFF4978	0.51	-0.4
1,995,514	-		GFF4978	0.51	-0.2
1,995,514	-		GFF4978	0.51	+0.5
1,995,777	+		GFF4978	0.76	+0.4
1,996,107	+		GFF4979	0.14	-0.0
1,996,378	-		GFF4979	0.43	-0.3
1,996,378	-		GFF4979	0.43	-0.2
1,996,693	-		GFF4979	0.78	-0.3
1,996,772	+		GFF4979	0.87	-0.3
1,996,912	-				+0.1
1,997,368	-		GFF4980	0.45	+0.1