Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4941

Experiment: Ying_AminoAcid20 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 1
1,959,682	-				-0.2
1,959,852	+		GFF4941	0.16	-0.4
1,959,853	-		GFF4941	0.16	-0.1
1,960,866	+		GFF4941	0.80	+1.6
1,960,931	-		GFF4941	0.84	-1.6
1,960,932	+		GFF4941	0.84	+0.0
1,960,932	+		GFF4941	0.84	+0.2
1,960,933	-		GFF4941	0.84	+0.7
1,960,933	-		GFF4941	0.84	+0.1
1,960,933	-		GFF4941	0.84	-0.8
1,960,933	-		GFF4941	0.84	+1.3
1,960,936	+		GFF4941	0.84	-0.2
1,960,936	+		GFF4941	0.84	+0.1
1,960,936	+		GFF4941	0.84	-0.5
1,960,937	-		GFF4941	0.84	-0.0
1,960,937	-		GFF4941	0.84	+0.8
1,960,937	-		GFF4941	0.84	+0.3
1,960,937	-		GFF4941	0.84	+0.7
1,960,942	+		GFF4941	0.84	+0.3
1,960,943	-		GFF4941	0.84	+0.6
1,960,943	-		GFF4941	0.84	-0.4
1,961,119	+				-0.1
1,961,119	+				-0.6
1,961,291	-				-1.0
1,961,525	-		GFF4942	0.33	+0.2
1,961,539	+		GFF4942	0.34	-0.6
1,961,540	-		GFF4942	0.34	+0.3
1,961,540	-		GFF4942	0.34	+0.8
1,961,677	+		GFF4942	0.48	+1.2
1,961,678	-		GFF4942	0.48	-0.4
1,962,064	+		GFF4942	0.87	-0.8
1,962,065	-		GFF4942	0.88	-0.2