Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4581

Experiment: Ying_AminoAcid20 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 1
1,522,863	+		GFF4580	0.75	-0.7
1,522,989	+		GFF4580	0.84	-0.3
1,522,990	-		GFF4580	0.84	-0.9
1,522,990	-		GFF4580	0.84	+0.6
1,523,157	+				+0.4
1,523,157	+				+0.1
1,523,157	+				+0.5
1,523,157	+				-0.7
1,523,157	+				-0.3
1,523,158	-				-0.0
1,523,158	-				+0.2
1,523,158	-				-0.4
1,523,316	+				-0.1
1,523,316	+				-0.2
1,523,316	+				-0.5
1,523,316	+				-0.6
1,523,317	-				-0.3
1,523,317	-				+1.0
1,523,317	-				-0.2
1,523,318	+				-0.6
1,523,318	+				-0.4
1,523,318	+				+0.5
1,523,319	-				-0.9
1,523,326	+				+0.9
1,523,326	+				-0.6
1,523,326	+				-0.0
1,523,326	+				+1.2
1,523,326	+				+1.0
1,523,327	-				+0.2
1,523,327	-				-0.2
1,523,327	-				+0.7
1,523,327	-				-0.8
1,523,327	-				+0.2
1,523,327	-				+0.0
1,523,354	+				+0.7
1,523,354	+				+0.0
1,523,355	-				-0.3
1,523,355	-				+0.3
1,523,505	+				+0.3
1,523,506	-				+0.1
1,523,641	-				+0.1
1,523,670	+				-0.2
1,523,670	+				+0.0
1,523,671	-				-0.7
1,523,671	-				+0.2
1,523,731	+		GFF4581	0.20	+0.0
1,523,731	+		GFF4581	0.20	-0.2
1,523,739	+		GFF4581	0.21	-0.1
1,523,739	+		GFF4581	0.21	-0.3
1,523,739	+		GFF4581	0.21	+0.9
1,523,739	+		GFF4581	0.21	-0.1
1,523,739	+		GFF4581	0.21	-0.7
1,523,740	-		GFF4581	0.21	-0.2
1,523,740	-		GFF4581	0.21	-0.4
1,523,740	-		GFF4581	0.21	-0.8
1,523,740	-		GFF4581	0.21	+0.1
1,523,872	-		GFF4581	0.43	-0.8
1,523,919	+		GFF4581	0.51	+0.4
1,523,919	+		GFF4581	0.51	-0.4
1,523,920	-		GFF4581	0.51	-0.4
1,523,920	-		GFF4581	0.51	+0.1
1,523,978	+		GFF4581	0.61	+0.4
1,523,986	+		GFF4581	0.62	-1.6
1,523,986	+		GFF4581	0.62	+0.6
1,523,986	+		GFF4581	0.62	-0.1
1,523,987	-		GFF4581	0.63	+0.6
1,523,987	-		GFF4581	0.63	-0.2
1,523,987	-		GFF4581	0.63	-0.1
1,524,204	+				+1.0
1,524,205	-				-0.2
1,524,359	+				+0.2
1,524,430	+				-0.1
1,524,432	-				-0.4
1,524,446	+				-0.5
1,524,447	-				+0.1
1,524,497	+				+0.4
1,524,498	-				+0.1
1,524,498	-				-0.5
1,524,559	+				-0.7
1,524,560	-				-0.3
1,524,570	+				+0.6
1,524,570	+				+0.3
1,524,570	+				+0.5
1,524,571	-				-0.2
1,524,571	-				-0.4
1,524,574	+				+0.2
1,524,574	+				+0.4
1,524,574	+				-0.2
1,524,574	+				-0.4
1,524,574	+				+0.9
1,524,574	+				+0.1
1,524,574	+				+0.7
1,524,575	-				+0.1
1,524,575	-				+0.2
1,524,575	-				+0.1
1,524,575	-				+0.9
1,524,575	-				+0.1
1,524,575	-				-1.0
1,524,575	-				-0.2
1,524,575	-				-1.2
1,524,575	-				+0.0
1,524,585	+				+0.1
1,524,641	-				+0.4
1,524,679	+				-0.8
1,524,679	+				-0.7
1,524,679	+				+0.3
1,524,679	+				+0.7
1,524,680	-				-0.2
1,524,680	-				-0.4
1,524,680	-				-0.2
1,524,692	+				+0.3
1,524,693	-				-0.1
1,524,703	+				+0.1
1,524,704	-				-0.4
1,524,710	+				+0.2
1,524,710	+				+0.4
1,524,710	+				-0.2
1,524,711	-				+0.6
1,524,711	-				+0.0
1,524,711	-				+0.0
1,524,804	+				-0.6
1,524,805	-				-0.0
1,524,834	+				-0.7
1,524,834	+				+0.6
1,524,834	+				+0.1
1,524,835	-				+0.5
1,524,862	-				-0.3
1,524,916	+				-0.3
1,524,916	+				-2.3
1,524,917	-				+0.0
1,524,917	-				-0.1
1,524,988	+				-0.0
1,524,988	+				+0.3
1,524,989	-				+0.4
1,524,993	+				-0.4
1,524,994	-				+0.5
1,524,994	-				-0.3
1,524,994	-				+0.0
1,525,094	+		GFF4582	0.13	+0.7
1,525,094	+		GFF4582	0.13	-0.5
1,525,094	+		GFF4582	0.13	+0.8
1,525,095	-		GFF4582	0.13	+1.6
1,525,133	+		GFF4582	0.15	+0.3
1,525,134	-		GFF4582	0.15	-2.4
1,525,188	+		GFF4582	0.17	+0.0
1,525,188	+		GFF4582	0.17	+1.0
1,525,188	+		GFF4582	0.17	-0.0
1,525,189	-		GFF4582	0.17	+0.2
1,525,189	-		GFF4582	0.17	-0.8
1,525,189	-		GFF4582	0.17	+0.1