Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF436

Experiment: Ying_AminoAcid20 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF434 and GFF435 are separated by 2 nucleotidesGFF435 and GFF436 overlap by 4 nucleotidesGFF436 and GFF437 overlap by 4 nucleotides GFF434 - 3-dehydroquinate dehydratase II (EC 4.2.1.10), at 104,101 to 104,553 GFF434 GFF435 - Enoyl-CoA hydratase (EC 4.2.1.17), at 104,556 to 105,341 GFF435 GFF436 - Enoyl-CoA hydratase (EC 4.2.1.17), at 105,338 to 106,144 GFF436 GFF437 - Acetyl-CoA acetyltransferase (EC 2.3.1.9) @ Beta-ketoadipyl CoA thiolase (EC 2.3.1.-), at 106,141 to 107,331 GFF437 Position (kb) 105 106 107Strain fitness (log2 ratio) -1 0 1at 104.389 kb on + strand, within GFF434at 104.390 kb on - strand, within GFF434at 105.130 kb on + strand, within GFF435at 105.883 kb on - strand, within GFF436

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 1
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104,389 + GFF434 0.64 -0.4
104,390 - GFF434 0.64 -0.7
105,130 + GFF435 0.73 -0.1
105,883 - GFF436 0.68 -0.6

Or see this region's nucleotide sequence