Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3949

Experiment: Ying_AminoAcid20 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 1
863,437	+		GFF3948	0.61	+0.1
863,536	+		GFF3948	0.65	+0.0
863,537	-		GFF3948	0.65	+1.2
863,886	-		GFF3948	0.79	-0.3
863,886	-		GFF3948	0.79	+0.2
863,886	-		GFF3948	0.79	+0.2
864,175	+				-0.4
864,175	+				+0.2
864,176	-				+0.2
864,755	+		GFF3949	0.36	+0.0
864,756	-		GFF3949	0.36	+0.7
864,771	-		GFF3949	0.37	+0.6
864,771	-		GFF3949	0.37	+0.4
864,779	+		GFF3949	0.38	-0.2
864,779	+		GFF3949	0.38	-0.6
864,780	-		GFF3949	0.38	-0.2
864,780	-		GFF3949	0.38	+0.5
864,780	-		GFF3949	0.38	+0.8
865,043	+		GFF3949	0.66	+0.3
865,043	+		GFF3949	0.66	+0.5
865,044	-		GFF3949	0.66	+0.9
865,104	+		GFF3949	0.72	+0.2
865,104	+		GFF3949	0.72	-0.0
865,367	+				+0.8