Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3913

Experiment: Ying_AminoAcid20 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3912 and GFF3913 are separated by 15 nucleotidesGFF3913 and GFF3914 are separated by 267 nucleotidesGFF3914 and GFF3915 are separated by 150 nucleotides GFF3912 - TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins, at 824,551 to 826,971 GFF3912 GFF3913 - hypothetical protein, at 826,987 to 827,136 GFF3913 GFF3914 - Alkyl hydroperoxide reductase protein C (EC 1.6.4.-), at 827,404 to 827,967 GFF3914 GFF3915 - Alkyl hydroperoxide reductase protein F (EC 1.6.4.-), at 828,118 to 829,707 GFF3915 Position (kb) 826 827 828Strain fitness (log2 ratio) -2 -1 0 1 2at 826.040 kb on + strand, within GFF3912at 826.040 kb on + strand, within GFF3912at 826.082 kb on + strand, within GFF3912at 826.083 kb on - strand, within GFF3912at 826.083 kb on - strand, within GFF3912at 826.083 kb on - strand, within GFF3912at 826.083 kb on - strand, within GFF3912at 826.113 kb on - strand, within GFF3912at 826.113 kb on - strand, within GFF3912at 826.113 kb on - strand, within GFF3912at 826.250 kb on + strand, within GFF3912at 826.251 kb on - strand, within GFF3912at 826.251 kb on - strand, within GFF3912at 826.251 kb on - strand, within GFF3912at 826.277 kb on + strand, within GFF3912at 826.277 kb on + strand, within GFF3912at 826.278 kb on - strand, within GFF3912at 826.278 kb on - strand, within GFF3912at 826.334 kb on + strand, within GFF3912at 826.334 kb on + strand, within GFF3912at 826.334 kb on + strand, within GFF3912at 826.334 kb on + strand, within GFF3912at 826.334 kb on + strand, within GFF3912at 826.334 kb on + strand, within GFF3912at 826.334 kb on + strand, within GFF3912at 826.334 kb on + strand, within GFF3912at 826.335 kb on - strand, within GFF3912at 826.335 kb on - strand, within GFF3912at 826.335 kb on - strand, within GFF3912at 826.335 kb on - strand, within GFF3912at 826.335 kb on - strand, within GFF3912at 826.335 kb on - strand, within GFF3912at 826.361 kb on + strand, within GFF3912at 826.566 kb on - strand, within GFF3912at 826.566 kb on - strand, within GFF3912at 826.616 kb on + strand, within GFF3912at 826.616 kb on + strand, within GFF3912at 826.616 kb on + strand, within GFF3912at 826.617 kb on - strand, within GFF3912at 826.617 kb on - strand, within GFF3912at 826.640 kb on + strand, within GFF3912at 826.724 kb on + strand, within GFF3912at 826.724 kb on + strand, within GFF3912at 826.724 kb on + strand, within GFF3912at 826.725 kb on - strand, within GFF3912at 826.811 kb on - strandat 826.877 kb on + strandat 826.877 kb on + strandat 826.877 kb on + strandat 826.878 kb on - strandat 826.878 kb on - strandat 826.878 kb on - strandat 826.878 kb on - strandat 826.919 kb on + strandat 826.919 kb on + strandat 826.920 kb on - strandat 826.979 kb on - strandat 826.983 kb on - strandat 826.983 kb on - strandat 826.986 kb on + strandat 826.986 kb on + strandat 826.986 kb on + strandat 826.986 kb on + strandat 826.986 kb on + strandat 826.986 kb on + strandat 826.986 kb on + strandat 826.986 kb on + strandat 826.986 kb on + strandat 826.987 kb on - strandat 826.987 kb on - strandat 826.987 kb on - strandat 826.987 kb on - strandat 826.987 kb on - strandat 826.987 kb on - strandat 826.987 kb on - strandat 826.987 kb on - strandat 826.987 kb on - strandat 826.987 kb on - strandat 826.987 kb on - strandat 827.075 kb on + strand, within GFF3913at 827.138 kb on - strandat 827.207 kb on - strandat 827.317 kb on + strandat 827.329 kb on - strandat 827.329 kb on - strandat 827.418 kb on + strandat 827.418 kb on + strandat 827.419 kb on - strandat 827.419 kb on - strandat 827.419 kb on - strandat 827.575 kb on + strand, within GFF3914at 827.575 kb on + strand, within GFF3914at 827.575 kb on + strand, within GFF3914at 827.575 kb on + strand, within GFF3914at 827.575 kb on + strand, within GFF3914at 827.576 kb on - strand, within GFF3914at 827.576 kb on - strand, within GFF3914at 827.608 kb on + strand, within GFF3914at 827.608 kb on + strand, within GFF3914at 827.608 kb on + strand, within GFF3914at 827.608 kb on + strand, within GFF3914at 827.608 kb on + strand, within GFF3914at 827.608 kb on + strand, within GFF3914at 827.609 kb on - strand, within GFF3914at 827.609 kb on - strand, within GFF3914at 827.609 kb on - strand, within GFF3914at 827.872 kb on + strand, within GFF3914at 827.873 kb on - strand, within GFF3914at 827.873 kb on - strand, within GFF3914at 828.103 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 1
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826,040 + GFF3912 0.62 +1.1
826,040 + GFF3912 0.62 +0.3
826,082 + GFF3912 0.63 -0.1
826,083 - GFF3912 0.63 -0.6
826,083 - GFF3912 0.63 -0.4
826,083 - GFF3912 0.63 -1.0
826,083 - GFF3912 0.63 -0.8
826,113 - GFF3912 0.65 +0.5
826,113 - GFF3912 0.65 -0.1
826,113 - GFF3912 0.65 +0.8
826,250 + GFF3912 0.70 -0.5
826,251 - GFF3912 0.70 -1.0
826,251 - GFF3912 0.70 -0.1
826,251 - GFF3912 0.70 +0.7
826,277 + GFF3912 0.71 -1.1
826,277 + GFF3912 0.71 +0.2
826,278 - GFF3912 0.71 +0.9
826,278 - GFF3912 0.71 +0.0
826,334 + GFF3912 0.74 -0.3
826,334 + GFF3912 0.74 +0.0
826,334 + GFF3912 0.74 -0.9
826,334 + GFF3912 0.74 -0.7
826,334 + GFF3912 0.74 +0.3
826,334 + GFF3912 0.74 +0.0
826,334 + GFF3912 0.74 -0.6
826,334 + GFF3912 0.74 +1.0
826,335 - GFF3912 0.74 -0.5
826,335 - GFF3912 0.74 -0.6
826,335 - GFF3912 0.74 +0.4
826,335 - GFF3912 0.74 +0.1
826,335 - GFF3912 0.74 -0.2
826,335 - GFF3912 0.74 +0.2
826,361 + GFF3912 0.75 +0.1
826,566 - GFF3912 0.83 +0.6
826,566 - GFF3912 0.83 -0.6
826,616 + GFF3912 0.85 +0.2
826,616 + GFF3912 0.85 -0.5
826,616 + GFF3912 0.85 +0.3
826,617 - GFF3912 0.85 +0.2
826,617 - GFF3912 0.85 +0.3
826,640 + GFF3912 0.86 -0.5
826,724 + GFF3912 0.90 +0.8
826,724 + GFF3912 0.90 +0.5
826,724 + GFF3912 0.90 -2.0
826,725 - GFF3912 0.90 +0.1
826,811 - -1.1
826,877 + -0.6
826,877 + -0.1
826,877 + -0.5
826,878 - +0.6
826,878 - +0.4
826,878 - +0.4
826,878 - -0.0
826,919 + -0.1
826,919 + -0.1
826,920 - -0.5
826,979 - -0.8
826,983 - -0.3
826,983 - -0.1
826,986 + +0.1
826,986 + +0.9
826,986 + -0.0
826,986 + +1.9
826,986 + +0.2
826,986 + -0.2
826,986 + -0.1
826,986 + +0.1
826,986 + -1.3
826,987 - +0.4
826,987 - +0.4
826,987 - -0.3
826,987 - +0.2
826,987 - -0.2
826,987 - +0.3
826,987 - -0.1
826,987 - -0.1
826,987 - -0.3
826,987 - -0.1
826,987 - +0.0
827,075 + GFF3913 0.59 -0.4
827,138 - +0.2
827,207 - +0.6
827,317 + -0.4
827,329 - +0.2
827,329 - +0.2
827,418 + -0.5
827,418 + -0.8
827,419 - +0.8
827,419 - +0.6
827,419 - -0.3
827,575 + GFF3914 0.30 +0.2
827,575 + GFF3914 0.30 +1.6
827,575 + GFF3914 0.30 -0.2
827,575 + GFF3914 0.30 -0.7
827,575 + GFF3914 0.30 +0.7
827,576 - GFF3914 0.30 -0.1
827,576 - GFF3914 0.30 +0.0
827,608 + GFF3914 0.36 -0.4
827,608 + GFF3914 0.36 +1.6
827,608 + GFF3914 0.36 +0.6
827,608 + GFF3914 0.36 +0.1
827,608 + GFF3914 0.36 +0.3
827,608 + GFF3914 0.36 +0.0
827,609 - GFF3914 0.36 -0.5
827,609 - GFF3914 0.36 +0.6
827,609 - GFF3914 0.36 +0.5
827,872 + GFF3914 0.83 +0.4
827,873 - GFF3914 0.83 +1.6
827,873 - GFF3914 0.83 -1.4
828,103 + +0.1

Or see this region's nucleotide sequence