Experiment: Ying_AminoAcid20 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3883 and GFF3884 are separated by 1 nucleotides GFF3884 and GFF3885 are separated by 138 nucleotides GFF3885 and GFF3886 are separated by 231 nucleotides GFF3886 and GFF3887 are separated by 152 nucleotides
GFF3883 - 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-), at 797,152 to 798,648
GFF3883
GFF3884 - hypothetical protein, at 798,650 to 798,988
GFF3884
GFF3885 - Integral membrane protein, interacts with FtsH, at 799,127 to 799,843
GFF3885
GFF3886 - Protein GlcG, at 800,075 to 800,482
GFF3886
GFF3887 - hypothetical protein, at 800,635 to 800,847
GFF3887
Position (kb) 799
800 Strain fitness (log2 ratio) -2
-1
0
1 at 798.451 kb on + strand, within GFF3883 at 798.451 kb on + strand, within GFF3883 at 798.452 kb on - strand, within GFF3883 at 798.742 kb on - strand, within GFF3884 at 798.756 kb on + strand, within GFF3884 at 798.756 kb on + strand, within GFF3884 at 798.756 kb on + strand, within GFF3884 at 798.756 kb on + strand, within GFF3884 at 798.756 kb on + strand, within GFF3884 at 798.756 kb on + strand, within GFF3884 at 798.757 kb on - strand, within GFF3884 at 798.757 kb on - strand, within GFF3884 at 798.757 kb on - strand, within GFF3884 at 798.757 kb on - strand, within GFF3884 at 798.757 kb on - strand, within GFF3884 at 798.810 kb on + strand, within GFF3884 at 799.128 kb on + strand at 799.128 kb on + strand at 799.128 kb on + strand at 799.128 kb on + strand at 799.129 kb on - strand at 799.197 kb on + strand at 799.197 kb on + strand at 799.221 kb on + strand, within GFF3885 at 799.221 kb on + strand, within GFF3885 at 799.221 kb on + strand, within GFF3885 at 799.221 kb on + strand, within GFF3885 at 799.221 kb on + strand, within GFF3885 at 799.221 kb on + strand, within GFF3885 at 799.221 kb on + strand, within GFF3885 at 799.221 kb on + strand, within GFF3885 at 799.221 kb on + strand, within GFF3885 at 799.222 kb on - strand, within GFF3885 at 799.222 kb on - strand, within GFF3885 at 799.222 kb on - strand, within GFF3885 at 799.222 kb on - strand, within GFF3885 at 799.222 kb on - strand, within GFF3885 at 799.222 kb on - strand, within GFF3885 at 799.260 kb on + strand, within GFF3885 at 799.261 kb on - strand, within GFF3885 at 799.269 kb on + strand, within GFF3885 at 799.270 kb on - strand, within GFF3885 at 799.734 kb on + strand, within GFF3885 at 799.737 kb on + strand, within GFF3885 at 799.737 kb on + strand, within GFF3885 at 799.737 kb on + strand, within GFF3885 at 799.738 kb on - strand, within GFF3885 at 799.738 kb on - strand, within GFF3885 at 799.738 kb on - strand, within GFF3885 at 799.738 kb on - strand, within GFF3885 at 799.904 kb on + strand at 799.904 kb on + strand at 799.904 kb on + strand at 799.904 kb on + strand at 799.904 kb on + strand at 799.904 kb on + strand at 799.905 kb on - strand at 799.905 kb on - strand at 799.905 kb on - strand at 799.905 kb on - strand at 799.905 kb on - strand at 799.954 kb on + strand at 799.954 kb on + strand at 799.955 kb on - strand at 799.993 kb on + strand at 800.020 kb on + strand at 800.020 kb on + strand at 800.062 kb on + strand at 800.063 kb on - strand at 800.063 kb on - strand at 800.297 kb on + strand, within GFF3886 at 800.297 kb on + strand, within GFF3886 at 800.297 kb on + strand, within GFF3886 at 800.297 kb on + strand, within GFF3886 at 800.298 kb on - strand, within GFF3886 at 800.298 kb on - strand, within GFF3886 at 800.480 kb on + strand at 800.481 kb on - strand at 800.520 kb on + strand at 800.637 kb on - strand at 800.637 kb on - strand at 800.637 kb on - strand at 800.637 kb on - strand at 800.681 kb on + strand, within GFF3887 at 800.768 kb on + strand, within GFF3887 at 800.768 kb on + strand, within GFF3887 at 800.769 kb on - strand, within GFF3887
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 1 remove 798,451 + GFF3883 0.87 -0.2 798,451 + GFF3883 0.87 -0.7 798,452 - GFF3883 0.87 +0.2 798,742 - GFF3884 0.27 +0.0 798,756 + GFF3884 0.31 -0.2 798,756 + GFF3884 0.31 +0.1 798,756 + GFF3884 0.31 +0.0 798,756 + GFF3884 0.31 -0.3 798,756 + GFF3884 0.31 -0.6 798,756 + GFF3884 0.31 -0.2 798,757 - GFF3884 0.32 -0.3 798,757 - GFF3884 0.32 -0.2 798,757 - GFF3884 0.32 +1.6 798,757 - GFF3884 0.32 +0.2 798,757 - GFF3884 0.32 -0.0 798,810 + GFF3884 0.47 -0.7 799,128 + -0.0 799,128 + -0.0 799,128 + +0.9 799,128 + -2.2 799,129 - +0.1 799,197 + +1.4 799,197 + +0.0 799,221 + GFF3885 0.13 -0.7 799,221 + GFF3885 0.13 -0.4 799,221 + GFF3885 0.13 -0.3 799,221 + GFF3885 0.13 +0.1 799,221 + GFF3885 0.13 -0.2 799,221 + GFF3885 0.13 -0.2 799,221 + GFF3885 0.13 -0.4 799,221 + GFF3885 0.13 +0.0 799,221 + GFF3885 0.13 +0.7 799,222 - GFF3885 0.13 -1.0 799,222 - GFF3885 0.13 -0.2 799,222 - GFF3885 0.13 +0.3 799,222 - GFF3885 0.13 -0.6 799,222 - GFF3885 0.13 +0.6 799,222 - GFF3885 0.13 +0.2 799,260 + GFF3885 0.19 +0.8 799,261 - GFF3885 0.19 +0.3 799,269 + GFF3885 0.20 -0.4 799,270 - GFF3885 0.20 +0.5 799,734 + GFF3885 0.85 +1.1 799,737 + GFF3885 0.85 +0.2 799,737 + GFF3885 0.85 +0.2 799,737 + GFF3885 0.85 +0.3 799,738 - GFF3885 0.85 +0.2 799,738 - GFF3885 0.85 +0.6 799,738 - GFF3885 0.85 +0.6 799,738 - GFF3885 0.85 +0.6 799,904 + -0.3 799,904 + +0.1 799,904 + -0.2 799,904 + -0.1 799,904 + +0.6 799,904 + -0.1 799,905 - -0.0 799,905 - -0.3 799,905 - -0.6 799,905 - -0.2 799,905 - -0.3 799,954 + -1.0 799,954 + +0.4 799,955 - +0.2 799,993 + +0.3 800,020 + -0.3 800,020 + +0.3 800,062 + +0.3 800,063 - +0.6 800,063 - -0.3 800,297 + GFF3886 0.54 +0.6 800,297 + GFF3886 0.54 +0.7 800,297 + GFF3886 0.54 -0.9 800,297 + GFF3886 0.54 -0.9 800,298 - GFF3886 0.55 +0.8 800,298 - GFF3886 0.55 -0.3 800,480 + +0.0 800,481 - +0.7 800,520 + -0.4 800,637 - -1.6 800,637 - +0.1 800,637 - +0.6 800,637 - +0.6 800,681 + GFF3887 0.22 +0.3 800,768 + GFF3887 0.62 -0.5 800,768 + GFF3887 0.62 +0.5 800,769 - GFF3887 0.63 -1.5
Or see this region's nucleotide sequence