Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3375

Experiment: Ying_AminoAcid20 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 1
260,402	+		GFF3374	0.72	+1.3
260,403	-		GFF3374	0.72	-0.0
260,403	-		GFF3374	0.72	-0.6
260,804	+		GFF3374	0.87	-0.4
260,954	+				-1.0
260,954	+				+0.4
260,955	-				-0.5
261,021	-				-1.1
261,021	-				-0.0
261,065	+				-0.4
261,071	+				-0.1
261,071	+				-0.4
261,071	+				+0.0
261,071	+				-0.9
261,072	-				+0.1
261,072	-				+0.5
261,072	-				+0.3
261,072	-				+0.4
261,099	-				+1.6
261,099	-				-0.1
261,099	-				-0.5
261,129	-				+0.4
261,523	+		GFF3375	0.52	+0.1
261,523	+		GFF3375	0.52	-1.0
261,523	+		GFF3375	0.52	+0.3
261,523	+		GFF3375	0.52	-0.1
261,524	-		GFF3375	0.52	-0.6
261,866	+		GFF3376	0.21	+1.6
262,120	-				-0.1
262,150	-				+0.0
262,245	+				-0.2
262,246	-				-0.3
262,246	-				-0.1
262,246	-				-0.0
262,246	-				-2.2
262,246	-				+1.3
262,266	-				-0.7
262,645	-		GFF3377	0.53	-0.4
262,696	-		GFF3377	0.58	-0.1
262,696	-		GFF3377	0.58	-0.2
262,743	+		GFF3377	0.64	-0.2