Experiment: Ying_AminoAcid20 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3314 and GFF3315 are separated by 57 nucleotides GFF3315 and GFF3316 are separated by 343 nucleotides
GFF3314 - Transcriptional regulator, at 200,812 to 201,705
GFF3314
GFF3315 - FIG00932412: hypothetical protein, at 201,763 to 202,158
GFF3315
GFF3316 - XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase), at 202,502 to 203,353
GFF3316
Position (kb) 201
202
203 Strain fitness (log2 ratio) -1
0
1 at 200.918 kb on + strand, within GFF3314 at 200.919 kb on - strand, within GFF3314 at 201.004 kb on + strand, within GFF3314 at 201.004 kb on + strand, within GFF3314 at 201.004 kb on + strand, within GFF3314 at 201.005 kb on - strand, within GFF3314 at 201.196 kb on + strand, within GFF3314 at 201.196 kb on + strand, within GFF3314 at 201.197 kb on - strand, within GFF3314 at 201.388 kb on + strand, within GFF3314 at 201.764 kb on + strand at 201.764 kb on + strand at 201.764 kb on + strand at 201.764 kb on + strand at 201.764 kb on + strand at 201.839 kb on + strand, within GFF3315 at 201.839 kb on + strand, within GFF3315 at 201.840 kb on - strand, within GFF3315 at 201.840 kb on - strand, within GFF3315 at 202.031 kb on + strand, within GFF3315 at 202.031 kb on + strand, within GFF3315 at 202.032 kb on - strand, within GFF3315 at 202.032 kb on - strand, within GFF3315 at 202.055 kb on + strand, within GFF3315 at 202.055 kb on + strand, within GFF3315 at 202.055 kb on + strand, within GFF3315 at 202.055 kb on + strand, within GFF3315 at 202.056 kb on - strand, within GFF3315 at 202.056 kb on - strand, within GFF3315 at 202.056 kb on - strand, within GFF3315 at 202.056 kb on - strand, within GFF3315 at 202.083 kb on - strand, within GFF3315 at 202.316 kb on - strand at 202.380 kb on + strand at 202.380 kb on + strand at 202.380 kb on + strand at 202.381 kb on - strand at 202.381 kb on - strand at 202.381 kb on - strand at 202.401 kb on + strand at 202.401 kb on + strand at 202.401 kb on + strand at 202.401 kb on + strand at 202.401 kb on + strand at 202.401 kb on + strand at 202.402 kb on - strand at 202.402 kb on - strand at 202.427 kb on + strand at 202.427 kb on + strand at 202.428 kb on - strand at 202.464 kb on + strand at 202.464 kb on + strand at 202.468 kb on + strand at 202.469 kb on - strand at 202.469 kb on - strand at 202.469 kb on - strand at 202.474 kb on + strand at 202.474 kb on + strand at 202.474 kb on + strand at 202.474 kb on + strand at 202.474 kb on + strand at 202.474 kb on + strand at 202.475 kb on - strand at 202.475 kb on - strand at 202.475 kb on - strand at 202.475 kb on - strand at 202.527 kb on + strand at 202.528 kb on - strand at 203.004 kb on - strand, within GFF3316 at 203.004 kb on - strand, within GFF3316 at 203.004 kb on - strand, within GFF3316
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 1 remove 200,918 + GFF3314 0.12 +0.3 200,919 - GFF3314 0.12 +0.2 201,004 + GFF3314 0.21 -1.4 201,004 + GFF3314 0.21 -0.4 201,004 + GFF3314 0.21 +0.2 201,005 - GFF3314 0.22 +1.0 201,196 + GFF3314 0.43 -1.2 201,196 + GFF3314 0.43 -0.0 201,197 - GFF3314 0.43 -0.5 201,388 + GFF3314 0.64 +0.9 201,764 + +0.6 201,764 + -0.4 201,764 + -0.4 201,764 + -0.3 201,764 + +1.0 201,839 + GFF3315 0.19 -0.6 201,839 + GFF3315 0.19 -0.2 201,840 - GFF3315 0.19 -0.4 201,840 - GFF3315 0.19 -0.7 202,031 + GFF3315 0.68 -0.1 202,031 + GFF3315 0.68 -0.4 202,032 - GFF3315 0.68 +0.4 202,032 - GFF3315 0.68 +1.2 202,055 + GFF3315 0.74 -0.1 202,055 + GFF3315 0.74 -0.1 202,055 + GFF3315 0.74 +0.0 202,055 + GFF3315 0.74 -0.6 202,056 - GFF3315 0.74 +0.4 202,056 - GFF3315 0.74 +0.8 202,056 - GFF3315 0.74 +0.3 202,056 - GFF3315 0.74 -0.1 202,083 - GFF3315 0.81 -0.9 202,316 - +0.6 202,380 + -0.0 202,380 + +0.9 202,380 + +0.8 202,381 - +0.3 202,381 - +0.2 202,381 - +1.3 202,401 + +0.1 202,401 + -1.0 202,401 + +0.5 202,401 + +0.1 202,401 + +0.5 202,401 + +0.1 202,402 - -0.7 202,402 - +0.9 202,427 + +0.6 202,427 + +0.0 202,428 - +0.2 202,464 + +0.1 202,464 + -0.3 202,468 + +0.3 202,469 - +0.3 202,469 - -0.2 202,469 - +0.8 202,474 + +0.1 202,474 + +0.3 202,474 + -0.2 202,474 + -0.3 202,474 + -0.4 202,474 + -0.6 202,475 - -0.5 202,475 - -1.0 202,475 - +0.0 202,475 - +0.2 202,527 + +0.2 202,528 - +0.1 203,004 - GFF3316 0.59 -0.1 203,004 - GFF3316 0.59 +0.1 203,004 - GFF3316 0.59 +0.1
Or see this region's nucleotide sequence