Experiment: Ying_AminoAcid20 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3310 and GFF3311 overlap by 31 nucleotides GFF3311 and GFF3312 are separated by 6 nucleotides GFF3312 and GFF3313 are separated by 5 nucleotides
GFF3310 - Transcriptional regulator, GntR family, at 197,302 to 198,027
GFF3310
GFF3311 - 5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17), at 197,997 to 198,395
GFF3311
GFF3312 - Protocatechuate 4,5-dioxygenase beta chain (EC 1.13.11.8), at 198,402 to 199,688
GFF3312
GFF3313 - putative exported protein, at 199,694 to 200,683
GFF3313
Position (kb) 198
199
200 Strain fitness (log2 ratio) -1
0
1 at 197.483 kb on + strand, within GFF3310 at 197.484 kb on - strand, within GFF3310 at 198.222 kb on + strand, within GFF3311 at 198.223 kb on - strand, within GFF3311 at 198.249 kb on + strand, within GFF3311 at 198.249 kb on + strand, within GFF3311 at 198.373 kb on - strand at 198.518 kb on - strand at 198.767 kb on - strand, within GFF3312 at 198.767 kb on - strand, within GFF3312 at 198.866 kb on - strand, within GFF3312 at 198.904 kb on + strand, within GFF3312 at 198.904 kb on + strand, within GFF3312 at 198.905 kb on - strand, within GFF3312 at 199.160 kb on - strand, within GFF3312 at 199.199 kb on - strand, within GFF3312 at 199.523 kb on - strand, within GFF3312 at 199.523 kb on - strand, within GFF3312 at 199.579 kb on + strand at 199.758 kb on + strand at 199.758 kb on + strand at 199.758 kb on + strand at 199.758 kb on + strand at 199.759 kb on - strand at 199.759 kb on - strand at 199.759 kb on - strand at 199.759 kb on - strand at 199.759 kb on - strand at 199.813 kb on - strand, within GFF3313 at 200.097 kb on + strand, within GFF3313 at 200.097 kb on + strand, within GFF3313 at 200.097 kb on + strand, within GFF3313 at 200.097 kb on + strand, within GFF3313 at 200.098 kb on - strand, within GFF3313 at 200.098 kb on - strand, within GFF3313 at 200.205 kb on + strand, within GFF3313 at 200.291 kb on + strand, within GFF3313 at 200.295 kb on + strand, within GFF3313 at 200.295 kb on + strand, within GFF3313 at 200.296 kb on - strand, within GFF3313 at 200.296 kb on - strand, within GFF3313 at 200.343 kb on + strand, within GFF3313 at 200.344 kb on - strand, within GFF3313
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 1 remove 197,483 + GFF3310 0.25 +0.8 197,484 - GFF3310 0.25 -0.0 198,222 + GFF3311 0.56 -0.3 198,223 - GFF3311 0.57 -0.4 198,249 + GFF3311 0.63 +0.5 198,249 + GFF3311 0.63 +0.4 198,373 - -1.2 198,518 - +0.0 198,767 - GFF3312 0.28 +0.4 198,767 - GFF3312 0.28 -0.7 198,866 - GFF3312 0.36 +0.4 198,904 + GFF3312 0.39 +0.2 198,904 + GFF3312 0.39 +0.8 198,905 - GFF3312 0.39 +0.4 199,160 - GFF3312 0.59 +0.1 199,199 - GFF3312 0.62 +0.0 199,523 - GFF3312 0.87 +0.3 199,523 - GFF3312 0.87 -0.1 199,579 + -1.1 199,758 + -1.2 199,758 + -0.3 199,758 + -0.3 199,758 + -0.9 199,759 - +0.4 199,759 - -0.7 199,759 - +0.2 199,759 - +1.6 199,759 - +0.2 199,813 - GFF3313 0.12 -0.4 200,097 + GFF3313 0.41 -0.6 200,097 + GFF3313 0.41 +0.6 200,097 + GFF3313 0.41 +0.8 200,097 + GFF3313 0.41 -0.1 200,098 - GFF3313 0.41 -0.7 200,098 - GFF3313 0.41 +0.0 200,205 + GFF3313 0.52 +0.3 200,291 + GFF3313 0.60 +1.0 200,295 + GFF3313 0.61 -0.2 200,295 + GFF3313 0.61 +0.8 200,296 - GFF3313 0.61 +0.5 200,296 - GFF3313 0.61 +0.7 200,343 + GFF3313 0.66 -0.2 200,344 - GFF3313 0.66 -0.4
Or see this region's nucleotide sequence