Experiment: Ying_AminoAcid20 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2994 and GFF2995 overlap by 20 nucleotides GFF2995 and GFF2996 are separated by 55 nucleotides GFF2996 and GFF2997 are separated by 15 nucleotides GFF2997 and GFF2998 are separated by 3 nucleotides
GFF2994 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 74,183 to 75,727
GFF2994
GFF2995 - phosphoesterase, PA-phosphatase related, at 75,708 to 76,367
GFF2995
GFF2996 - hypothetical protein, at 76,423 to 76,596
GFF2996
GFF2997 - hypothetical protein, at 76,612 to 76,851
GFF2997
GFF2998 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41), at 76,855 to 78,120
GFF2998
Position (kb) 76
77 Strain fitness (log2 ratio) -1
0
1 at 76.135 kb on + strand, within GFF2995 at 76.135 kb on + strand, within GFF2995 at 76.135 kb on + strand, within GFF2995 at 76.136 kb on - strand, within GFF2995 at 76.136 kb on - strand, within GFF2995 at 76.136 kb on - strand, within GFF2995 at 76.136 kb on - strand, within GFF2995 at 76.154 kb on - strand, within GFF2995 at 76.154 kb on - strand, within GFF2995 at 76.159 kb on + strand, within GFF2995 at 76.159 kb on + strand, within GFF2995 at 76.159 kb on + strand, within GFF2995 at 76.159 kb on + strand, within GFF2995 at 76.160 kb on - strand, within GFF2995 at 76.160 kb on - strand, within GFF2995 at 76.160 kb on - strand, within GFF2995 at 76.160 kb on - strand, within GFF2995 at 76.160 kb on - strand, within GFF2995 at 76.252 kb on + strand, within GFF2995 at 76.253 kb on - strand, within GFF2995 at 76.303 kb on + strand at 76.304 kb on - strand at 76.408 kb on + strand at 76.408 kb on + strand at 76.408 kb on + strand at 76.409 kb on - strand at 76.409 kb on - strand at 76.409 kb on - strand at 76.409 kb on - strand at 76.409 kb on - strand at 76.449 kb on + strand, within GFF2996 at 76.449 kb on + strand, within GFF2996 at 76.449 kb on + strand, within GFF2996 at 76.449 kb on + strand, within GFF2996 at 76.450 kb on - strand, within GFF2996 at 76.501 kb on - strand, within GFF2996 at 76.904 kb on - strand at 77.461 kb on + strand, within GFF2998 at 77.462 kb on - strand, within GFF2998
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 1 remove 76,135 + GFF2995 0.65 -0.3 76,135 + GFF2995 0.65 +1.1 76,135 + GFF2995 0.65 -0.3 76,136 - GFF2995 0.65 +0.1 76,136 - GFF2995 0.65 +0.8 76,136 - GFF2995 0.65 -0.4 76,136 - GFF2995 0.65 +0.7 76,154 - GFF2995 0.68 +0.7 76,154 - GFF2995 0.68 -0.1 76,159 + GFF2995 0.68 -0.3 76,159 + GFF2995 0.68 -0.3 76,159 + GFF2995 0.68 +1.0 76,159 + GFF2995 0.68 -0.2 76,160 - GFF2995 0.68 +0.6 76,160 - GFF2995 0.68 -1.0 76,160 - GFF2995 0.68 -0.0 76,160 - GFF2995 0.68 +0.6 76,160 - GFF2995 0.68 -0.2 76,252 + GFF2995 0.82 -0.0 76,253 - GFF2995 0.83 +1.0 76,303 + -0.5 76,304 - +0.2 76,408 + -0.1 76,408 + -1.4 76,408 + -0.6 76,409 - +0.4 76,409 - +1.5 76,409 - +0.0 76,409 - -1.0 76,409 - +0.6 76,449 + GFF2996 0.15 -0.1 76,449 + GFF2996 0.15 -0.4 76,449 + GFF2996 0.15 -0.3 76,449 + GFF2996 0.15 -0.4 76,450 - GFF2996 0.16 +0.0 76,501 - GFF2996 0.45 -0.5 76,904 - -0.1 77,461 + GFF2998 0.48 +0.9 77,462 - GFF2998 0.48 +0.8
Or see this region's nucleotide sequence