Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2954

Experiment: Ying_AminoAcid20 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 1
31,837	+		GFF2952	0.68	+0.3
31,837	+		GFF2952	0.68	+0.5
31,837	+		GFF2952	0.68	-0.1
31,837	+		GFF2952	0.68	-0.0
31,838	-		GFF2952	0.69	+1.9
31,838	-		GFF2952	0.69	+0.1
31,838	-		GFF2952	0.69	-0.4
31,894	+		GFF2952	0.74	+0.2
31,894	+		GFF2952	0.74	+0.6
31,894	+		GFF2952	0.74	-0.4
31,895	-		GFF2952	0.74	-1.1
31,895	-		GFF2952	0.74	-0.2
32,217	+		GFF2953	0.10	-0.6
32,217	+		GFF2953	0.10	-0.7
32,218	-		GFF2953	0.10	+0.7
32,253	+		GFF2953	0.17	+0.2
32,253	+		GFF2953	0.17	+0.0
32,253	+		GFF2953	0.17	-0.6
32,253	+		GFF2953	0.17	-0.7
32,253	+		GFF2953	0.17	+0.4
32,253	+		GFF2953	0.17	-0.0
32,253	+		GFF2953	0.17	+0.4
32,254	-		GFF2953	0.17	+0.1
32,254	-		GFF2953	0.17	+0.6
32,254	-		GFF2953	0.17	-0.1
32,254	-		GFF2953	0.17	-0.1
32,254	-		GFF2953	0.17	-0.7
32,254	-		GFF2953	0.17	-0.1
32,254	-		GFF2953	0.17	-0.3
32,352	+		GFF2953	0.36	+0.5
32,352	+		GFF2953	0.36	-0.4
32,352	+		GFF2953	0.36	-0.3
32,352	+		GFF2953	0.36	+0.2
32,352	+		GFF2953	0.36	-0.2
32,353	-		GFF2953	0.36	-0.2
32,353	-		GFF2953	0.36	-1.5
32,353	-		GFF2953	0.36	+0.2
32,353	-		GFF2953	0.36	+0.3
32,379	+		GFF2953	0.41	+0.9
32,379	+		GFF2953	0.41	-0.3
32,380	-		GFF2953	0.41	-0.5
32,380	-		GFF2953	0.41	+0.4
32,380	-		GFF2953	0.41	+0.1
32,380	-		GFF2953	0.41	-0.1
32,406	+		GFF2953	0.46	+0.2
32,406	+		GFF2953	0.46	-1.1
32,406	+		GFF2953	0.46	-0.3
32,406	+		GFF2953	0.46	-0.8
32,406	+		GFF2953	0.46	-0.2
32,406	+		GFF2953	0.46	+0.2
32,407	-		GFF2953	0.46	-0.3
32,407	-		GFF2953	0.46	+0.3
32,407	-		GFF2953	0.46	+0.3
32,407	-		GFF2953	0.46	+0.6
32,407	-		GFF2953	0.46	-2.2
32,407	-		GFF2953	0.46	-0.1
32,407	-		GFF2953	0.46	+1.1
32,407	-		GFF2953	0.46	+1.3
32,526	+		GFF2953	0.69	-0.2
32,526	+		GFF2953	0.69	+0.3
32,527	-		GFF2953	0.69	-0.2
32,527	-		GFF2953	0.69	+0.3
32,527	-		GFF2953	0.69	+0.2
32,527	-		GFF2953	0.69	-0.1
32,527	-		GFF2953	0.69	-0.1
32,759	+				+0.5
32,759	+				+0.1
32,759	+				+0.8
32,759	+				+0.1
32,759	+				+0.9
32,759	+				-1.7
32,759	+				+0.3
32,760	-				-0.8
32,760	-				+0.6
32,760	-				+0.8
32,780	+				+0.2
32,780	+				+0.5
32,780	+				-1.8
32,780	+				-1.7
32,780	+				+0.7
32,780	+				-1.0
32,780	+				+0.2
32,780	+				+0.2
32,780	+				-0.1
32,781	-				+0.3
32,781	-				+0.3
32,781	-				+0.8
32,781	-				+0.2
32,781	-				-0.7
32,781	-				-0.3
32,781	-				+0.0
32,781	-				-0.2
32,781	-				-0.0
32,781	-				-0.3
32,975	+		GFF2954	0.25	-0.1
32,975	+		GFF2954	0.25	+0.0
32,975	+		GFF2954	0.25	+1.6
32,975	+		GFF2954	0.25	+0.7
32,975	+		GFF2954	0.25	+0.0
32,976	-		GFF2954	0.25	-0.7
32,976	-		GFF2954	0.25	+0.4
33,273	-		GFF2954	0.60	-1.2
33,273	-		GFF2954	0.60	-0.4
33,368	+		GFF2954	0.71	-0.4
33,368	+		GFF2954	0.71	+0.2
33,368	+		GFF2954	0.71	-0.9
33,368	+		GFF2954	0.71	-0.7
33,369	-		GFF2954	0.71	-0.8
33,369	-		GFF2954	0.71	-1.0
33,369	-		GFF2954	0.71	-0.2
33,369	-		GFF2954	0.71	-0.5
33,369	-		GFF2954	0.71	-0.6
33,369	-		GFF2954	0.71	+0.1
33,500	+		GFF2954	0.86	-1.5
33,500	+		GFF2954	0.86	-0.6
33,500	+		GFF2954	0.86	+0.9
33,500	+		GFF2954	0.86	-0.7
33,500	+		GFF2954	0.86	-1.2
33,500	+		GFF2954	0.86	+0.1
33,500	+		GFF2954	0.86	-0.7
33,500	+		GFF2954	0.86	-0.6
33,500	+		GFF2954	0.86	-0.4
33,500	+		GFF2954	0.86	+0.4
33,501	-		GFF2954	0.86	-0.5
33,501	-		GFF2954	0.86	-1.0
33,501	-		GFF2954	0.86	-1.8
33,501	-		GFF2954	0.86	-0.7
33,501	-		GFF2954	0.86	+0.1
33,501	-		GFF2954	0.86	-0.5
33,501	-		GFF2954	0.86	-1.1
33,501	-		GFF2954	0.86	-2.5
33,501	-		GFF2954	0.86	-1.1
33,501	-		GFF2954	0.86	+1.2
33,501	-		GFF2954	0.86	-0.5
33,501	-		GFF2954	0.86	-0.9
33,501	-		GFF2954	0.86	+0.5
33,501	-		GFF2954	0.86	+0.5
33,501	-		GFF2954	0.86	-1.3
33,501	-		GFF2954	0.86	-1.2
33,501	-		GFF2954	0.86	-1.2
33,503	+		GFF2954	0.86	-0.7
33,503	+		GFF2954	0.86	-0.9
33,503	+		GFF2954	0.86	-0.3
33,503	+		GFF2954	0.86	-1.1
33,503	+		GFF2954	0.86	-0.2
33,503	+		GFF2954	0.86	-0.8
33,503	+		GFF2954	0.86	+0.2
33,504	-		GFF2954	0.86	-0.4
33,504	-		GFF2954	0.86	+0.3
33,504	-		GFF2954	0.86	-1.5
33,504	-		GFF2954	0.86	-1.4
33,504	-		GFF2954	0.86	-0.8
33,504	-		GFF2954	0.86	-0.7
33,504	-		GFF2954	0.86	-0.4
33,504	-		GFF2954	0.86	-1.6
33,504	-		GFF2954	0.86	-1.2
33,591	+				-1.1
33,592	-				-1.0
33,592	-				-0.7
33,701	-				-1.5
33,701	-				-0.5
33,702	+				-0.2
33,703	-				+0.3
33,703	-				+0.4
33,703	-				-0.2
33,703	-				+0.2
33,746	+				-0.4
33,746	+				-0.1
33,747	-				-0.4
33,872	+				+1.6
33,872	+				+0.7
33,873	-				-0.2
33,873	-				-0.2
33,873	-				+0.5
33,893	+				-0.2
33,893	+				+0.4
33,893	+				+0.6
33,894	-				-0.5
34,229	+		GFF2955	0.29	-0.0
34,229	+		GFF2955	0.29	-1.5
34,229	+		GFF2955	0.29	+0.0
34,229	+		GFF2955	0.29	+0.3
34,229	+		GFF2955	0.29	-0.1
34,229	-		GFF2955	0.29	+0.3
34,230	-		GFF2955	0.29	-0.7
34,230	-		GFF2955	0.29	-0.9
34,356	-		GFF2955	0.45	+0.2
34,356	-		GFF2955	0.45	+0.2
34,373	+		GFF2955	0.47	-0.5
34,373	+		GFF2955	0.47	-0.1
34,373	+		GFF2955	0.47	-0.2
34,373	+		GFF2955	0.47	+0.1
34,373	+		GFF2955	0.47	+0.1
34,373	+		GFF2955	0.47	-0.3
34,374	-		GFF2955	0.47	+1.1
34,374	-		GFF2955	0.47	-0.6
34,374	-		GFF2955	0.47	-1.0
34,374	-		GFF2955	0.47	+0.9
34,425	-		GFF2955	0.53	+0.5
34,425	-		GFF2955	0.53	+0.6
34,580	+		GFF2955	0.72	+0.0
34,580	+		GFF2955	0.72	+0.4
34,580	+		GFF2955	0.72	-0.0
34,580	+		GFF2955	0.72	+0.1
34,580	+		GFF2955	0.72	+0.0
34,580	+		GFF2955	0.72	+1.6
34,580	+		GFF2955	0.72	+0.6
34,580	+		GFF2955	0.72	+0.3
34,580	+		GFF2955	0.72	-0.8
34,580	+		GFF2955	0.72	+0.2
34,581	-		GFF2955	0.72	-0.5
34,581	-		GFF2955	0.72	+0.1
34,581	-		GFF2955	0.72	+0.6
34,581	-		GFF2955	0.72	-0.0