Experiment: Ying_AminoAcid20 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2870 and GFF2871 are separated by 61 nucleotides GFF2871 and GFF2872 overlap by 4 nucleotides GFF2872 and GFF2873 overlap by 4 nucleotides GFF2873 and GFF2874 are separated by 1 nucleotides
GFF2870 - Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1), at 458,278 to 459,432
GFF2870
GFF2871 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 459,494 to 460,369
GFF2871
GFF2872 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 460,366 to 461,358
GFF2872
GFF2873 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 461,355 to 462,116
GFF2873
GFF2874 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 462,118 to 462,873
GFF2874
Position (kb) 460
461
462 Strain fitness (log2 ratio) -1
0
1 at 459.431 kb on - strand at 459.545 kb on + strand at 459.545 kb on + strand at 460.064 kb on + strand, within GFF2871 at 460.064 kb on + strand, within GFF2871 at 460.125 kb on - strand, within GFF2871 at 460.277 kb on + strand, within GFF2871 at 460.365 kb on + strand at 460.365 kb on + strand at 460.441 kb on + strand at 460.441 kb on + strand at 460.442 kb on - strand at 460.450 kb on + strand at 460.462 kb on + strand at 460.462 kb on + strand at 460.687 kb on + strand, within GFF2872 at 460.687 kb on + strand, within GFF2872 at 460.688 kb on - strand, within GFF2872 at 460.688 kb on - strand, within GFF2872 at 460.831 kb on + strand, within GFF2872 at 460.832 kb on - strand, within GFF2872 at 460.834 kb on + strand, within GFF2872 at 460.835 kb on - strand, within GFF2872 at 460.835 kb on - strand, within GFF2872 at 460.835 kb on - strand, within GFF2872 at 460.972 kb on + strand, within GFF2872 at 460.972 kb on + strand, within GFF2872 at 461.092 kb on + strand, within GFF2872 at 461.092 kb on + strand, within GFF2872 at 461.093 kb on - strand, within GFF2872 at 461.093 kb on - strand, within GFF2872 at 461.093 kb on - strand, within GFF2872 at 461.093 kb on - strand, within GFF2872 at 461.197 kb on + strand, within GFF2872 at 461.400 kb on + strand at 461.805 kb on + strand, within GFF2873 at 461.806 kb on - strand, within GFF2873 at 462.173 kb on - strand at 462.173 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 1 remove 459,431 - +0.4 459,545 + -0.4 459,545 + -0.1 460,064 + GFF2871 0.65 +0.0 460,064 + GFF2871 0.65 -0.0 460,125 - GFF2871 0.72 -0.5 460,277 + GFF2871 0.89 +0.5 460,365 + +0.2 460,365 + +0.3 460,441 + -0.8 460,441 + -0.3 460,442 - +0.6 460,450 + -1.1 460,462 + -1.4 460,462 + -0.1 460,687 + GFF2872 0.32 -0.2 460,687 + GFF2872 0.32 +0.3 460,688 - GFF2872 0.32 +1.7 460,688 - GFF2872 0.32 +0.3 460,831 + GFF2872 0.47 +0.4 460,832 - GFF2872 0.47 -1.1 460,834 + GFF2872 0.47 -0.1 460,835 - GFF2872 0.47 -0.6 460,835 - GFF2872 0.47 -0.5 460,835 - GFF2872 0.47 -0.5 460,972 + GFF2872 0.61 -0.3 460,972 + GFF2872 0.61 -1.2 461,092 + GFF2872 0.73 -0.1 461,092 + GFF2872 0.73 +0.4 461,093 - GFF2872 0.73 -0.8 461,093 - GFF2872 0.73 -0.1 461,093 - GFF2872 0.73 +0.2 461,093 - GFF2872 0.73 -0.0 461,197 + GFF2872 0.84 -1.0 461,400 + -0.5 461,805 + GFF2873 0.59 -0.2 461,806 - GFF2873 0.59 -0.3 462,173 - +1.3 462,173 - -0.8
Or see this region's nucleotide sequence