Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2606

Experiment: Ying_AminoAcid20 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2603 and GFF2604 are separated by 8 nucleotidesGFF2604 and GFF2605 are separated by 15 nucleotidesGFF2605 and GFF2606 overlap by 4 nucleotidesGFF2606 and GFF2607 are separated by 200 nucleotides GFF2603 - NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2), at 195,426 to 196,526 GFF2603 GFF2604 - Aspartate 1-decarboxylase (EC 4.1.1.11), at 196,535 to 196,885 GFF2604 GFF2605 - NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2), at 196,901 to 197,224 GFF2605 GFF2606 - NAD(P) transhydrogenase subunit beta (EC 1.6.1.2), at 197,221 to 198,645 GFF2606 GFF2607 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 198,846 to 200,534 GFF2607 Position (kb) 197 198 199Strain fitness (log2 ratio) -2 -1 0 1 2at 196.398 kb on + strand, within GFF2603at 196.398 kb on + strand, within GFF2603at 196.398 kb on + strand, within GFF2603at 196.398 kb on - strand, within GFF2603at 196.399 kb on - strand, within GFF2603at 196.399 kb on - strand, within GFF2603at 196.399 kb on - strand, within GFF2603at 196.587 kb on - strand, within GFF2604at 196.587 kb on - strand, within GFF2604at 196.661 kb on + strand, within GFF2604at 196.661 kb on + strand, within GFF2604at 196.662 kb on - strand, within GFF2604at 196.662 kb on - strand, within GFF2604at 196.662 kb on - strand, within GFF2604at 196.694 kb on + strand, within GFF2604at 196.694 kb on + strand, within GFF2604at 196.694 kb on + strand, within GFF2604at 196.695 kb on - strand, within GFF2604at 196.695 kb on - strand, within GFF2604at 196.695 kb on - strand, within GFF2604at 196.695 kb on - strand, within GFF2604at 196.790 kb on + strand, within GFF2604at 196.911 kb on + strandat 196.912 kb on - strandat 196.955 kb on + strand, within GFF2605at 196.955 kb on + strand, within GFF2605at 196.955 kb on + strand, within GFF2605at 196.955 kb on + strand, within GFF2605at 196.955 kb on + strand, within GFF2605at 196.956 kb on - strand, within GFF2605at 196.956 kb on - strand, within GFF2605at 196.956 kb on - strand, within GFF2605at 196.956 kb on - strand, within GFF2605at 196.956 kb on - strand, within GFF2605at 196.956 kb on - strand, within GFF2605at 196.956 kb on - strand, within GFF2605at 196.956 kb on - strand, within GFF2605at 196.956 kb on - strand, within GFF2605at 197.698 kb on + strand, within GFF2606at 197.698 kb on + strand, within GFF2606at 197.698 kb on + strand, within GFF2606at 197.698 kb on + strand, within GFF2606at 197.699 kb on - strand, within GFF2606at 197.699 kb on - strand, within GFF2606at 197.699 kb on - strand, within GFF2606at 197.699 kb on - strand, within GFF2606at 197.923 kb on + strand, within GFF2606at 197.923 kb on + strand, within GFF2606at 197.923 kb on + strand, within GFF2606at 198.022 kb on + strand, within GFF2606at 198.022 kb on + strand, within GFF2606at 198.022 kb on + strand, within GFF2606at 198.022 kb on + strand, within GFF2606at 198.023 kb on - strand, within GFF2606at 198.023 kb on - strand, within GFF2606at 198.023 kb on - strand, within GFF2606at 198.280 kb on + strand, within GFF2606at 198.280 kb on + strand, within GFF2606at 198.280 kb on + strand, within GFF2606at 198.281 kb on - strand, within GFF2606at 198.281 kb on - strand, within GFF2606at 198.352 kb on + strand, within GFF2606at 198.352 kb on + strand, within GFF2606at 198.472 kb on + strand, within GFF2606at 198.472 kb on + strand, within GFF2606at 198.472 kb on + strand, within GFF2606at 198.472 kb on + strand, within GFF2606at 198.472 kb on + strand, within GFF2606at 198.472 kb on + strand, within GFF2606at 198.472 kb on + strand, within GFF2606at 198.472 kb on + strand, within GFF2606at 198.473 kb on - strand, within GFF2606at 198.473 kb on - strand, within GFF2606at 198.496 kb on + strand, within GFF2606at 198.496 kb on + strand, within GFF2606at 198.496 kb on + strand, within GFF2606at 198.497 kb on - strand, within GFF2606at 198.497 kb on - strand, within GFF2606at 198.497 kb on - strand, within GFF2606at 198.497 kb on - strand, within GFF2606at 198.497 kb on - strand, within GFF2606at 198.497 kb on - strand, within GFF2606at 198.497 kb on - strand, within GFF2606at 198.571 kb on + strandat 198.571 kb on + strandat 198.571 kb on + strandat 198.571 kb on + strandat 198.572 kb on - strandat 198.572 kb on - strandat 198.572 kb on - strandat 198.712 kb on + strandat 198.740 kb on + strandat 198.740 kb on + strandat 198.741 kb on - strandat 198.820 kb on + strandat 198.820 kb on + strandat 198.820 kb on + strandat 198.820 kb on + strandat 198.821 kb on - strandat 198.821 kb on - strandat 198.821 kb on - strandat 198.885 kb on + strandat 198.924 kb on + strandat 198.925 kb on - strandat 198.985 kb on - strandat 199.050 kb on + strand, within GFF2607at 199.117 kb on - strand, within GFF2607at 199.353 kb on + strand, within GFF2607at 199.353 kb on + strand, within GFF2607at 199.353 kb on + strand, within GFF2607at 199.353 kb on + strand, within GFF2607at 199.354 kb on - strand, within GFF2607at 199.354 kb on - strand, within GFF2607at 199.494 kb on + strand, within GFF2607at 199.495 kb on - strand, within GFF2607

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 1
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196,398 + GFF2603 0.88 -0.6
196,398 + GFF2603 0.88 +1.1
196,398 + GFF2603 0.88 +0.9
196,398 - GFF2603 0.88 +0.0
196,399 - GFF2603 0.88 +1.1
196,399 - GFF2603 0.88 +0.3
196,399 - GFF2603 0.88 -0.3
196,587 - GFF2604 0.15 -0.1
196,587 - GFF2604 0.15 +1.3
196,661 + GFF2604 0.36 -1.1
196,661 + GFF2604 0.36 +2.0
196,662 - GFF2604 0.36 +0.8
196,662 - GFF2604 0.36 +0.1
196,662 - GFF2604 0.36 -0.7
196,694 + GFF2604 0.45 +0.1
196,694 + GFF2604 0.45 +1.0
196,694 + GFF2604 0.45 +1.0
196,695 - GFF2604 0.46 -0.4
196,695 - GFF2604 0.46 -1.9
196,695 - GFF2604 0.46 -0.2
196,695 - GFF2604 0.46 +0.8
196,790 + GFF2604 0.73 -0.3
196,911 + +0.3
196,912 - -0.7
196,955 + GFF2605 0.17 -0.6
196,955 + GFF2605 0.17 +0.1
196,955 + GFF2605 0.17 +0.2
196,955 + GFF2605 0.17 -0.3
196,955 + GFF2605 0.17 +0.0
196,956 - GFF2605 0.17 +0.3
196,956 - GFF2605 0.17 -0.8
196,956 - GFF2605 0.17 -0.1
196,956 - GFF2605 0.17 -0.0
196,956 - GFF2605 0.17 -0.6
196,956 - GFF2605 0.17 -0.6
196,956 - GFF2605 0.17 -0.4
196,956 - GFF2605 0.17 +0.6
196,956 - GFF2605 0.17 -0.1
197,698 + GFF2606 0.33 +0.7
197,698 + GFF2606 0.33 -0.0
197,698 + GFF2606 0.33 -0.4
197,698 + GFF2606 0.33 +0.0
197,699 - GFF2606 0.34 +0.7
197,699 - GFF2606 0.34 +0.4
197,699 - GFF2606 0.34 +0.9
197,699 - GFF2606 0.34 -1.9
197,923 + GFF2606 0.49 +1.1
197,923 + GFF2606 0.49 -0.1
197,923 + GFF2606 0.49 +0.2
198,022 + GFF2606 0.56 -0.2
198,022 + GFF2606 0.56 +0.8
198,022 + GFF2606 0.56 +0.8
198,022 + GFF2606 0.56 -0.0
198,023 - GFF2606 0.56 -0.1
198,023 - GFF2606 0.56 +0.6
198,023 - GFF2606 0.56 -0.0
198,280 + GFF2606 0.74 +0.4
198,280 + GFF2606 0.74 +0.6
198,280 + GFF2606 0.74 -0.2
198,281 - GFF2606 0.74 -0.8
198,281 - GFF2606 0.74 +0.1
198,352 + GFF2606 0.79 -0.8
198,352 + GFF2606 0.79 +0.1
198,472 + GFF2606 0.88 +0.4
198,472 + GFF2606 0.88 -0.1
198,472 + GFF2606 0.88 -0.2
198,472 + GFF2606 0.88 -0.1
198,472 + GFF2606 0.88 -0.3
198,472 + GFF2606 0.88 +0.2
198,472 + GFF2606 0.88 +0.2
198,472 + GFF2606 0.88 +0.4
198,473 - GFF2606 0.88 +0.7
198,473 - GFF2606 0.88 -0.8
198,496 + GFF2606 0.89 +0.3
198,496 + GFF2606 0.89 -0.1
198,496 + GFF2606 0.89 +0.4
198,497 - GFF2606 0.90 +0.3
198,497 - GFF2606 0.90 +0.1
198,497 - GFF2606 0.90 +0.6
198,497 - GFF2606 0.90 +0.4
198,497 - GFF2606 0.90 -2.3
198,497 - GFF2606 0.90 -0.1
198,497 - GFF2606 0.90 +0.7
198,571 + +0.5
198,571 + -0.6
198,571 + -1.9
198,571 + -0.0
198,572 - +0.3
198,572 - +0.6
198,572 - +0.1
198,712 + +0.0
198,740 + +0.1
198,740 + +0.2
198,741 - +1.0
198,820 + +1.0
198,820 + +0.0
198,820 + +0.1
198,820 + +0.0
198,821 - +0.2
198,821 - +0.9
198,821 - +0.8
198,885 + +0.4
198,924 + -0.2
198,925 - -0.7
198,985 - +0.1
199,050 + GFF2607 0.12 -0.6
199,117 - GFF2607 0.16 +0.4
199,353 + GFF2607 0.30 +0.6
199,353 + GFF2607 0.30 +0.9
199,353 + GFF2607 0.30 -0.9
199,353 + GFF2607 0.30 -0.2
199,354 - GFF2607 0.30 -0.3
199,354 - GFF2607 0.30 -0.0
199,494 + GFF2607 0.38 -0.2
199,495 - GFF2607 0.38 +0.7

Or see this region's nucleotide sequence