Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2019

Experiment: Ying_AminoAcid20 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2018 and GFF2019 are separated by 103 nucleotidesGFF2019 and GFF2020 are separated by 10 nucleotides GFF2018 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA, at 892,824 to 894,791 GFF2018 GFF2019 - NADPH:quinone oxidoreductase, at 894,895 to 895,515 GFF2019 GFF2020 - hypothetical protein, at 895,526 to 896,221 GFF2020 Position (kb) 894 895 896Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 893.939 kb on - strand, within GFF2018at 893.939 kb on - strand, within GFF2018at 894.158 kb on - strand, within GFF2018at 894.158 kb on - strand, within GFF2018at 894.284 kb on - strand, within GFF2018at 894.481 kb on + strand, within GFF2018at 894.481 kb on + strand, within GFF2018at 894.481 kb on + strand, within GFF2018at 894.481 kb on + strand, within GFF2018at 894.482 kb on - strand, within GFF2018at 894.482 kb on - strand, within GFF2018at 894.784 kb on + strandat 894.784 kb on + strandat 894.785 kb on - strandat 894.785 kb on - strandat 895.078 kb on + strand, within GFF2019at 895.078 kb on + strand, within GFF2019at 895.078 kb on + strand, within GFF2019at 895.078 kb on + strand, within GFF2019at 895.078 kb on + strand, within GFF2019at 895.078 kb on + strand, within GFF2019at 895.079 kb on - strand, within GFF2019at 895.079 kb on - strand, within GFF2019at 895.079 kb on - strand, within GFF2019at 895.177 kb on + strand, within GFF2019at 895.177 kb on + strand, within GFF2019at 895.178 kb on - strand, within GFF2019at 895.178 kb on - strand, within GFF2019at 895.178 kb on - strand, within GFF2019at 895.178 kb on - strand, within GFF2019at 895.189 kb on + strand, within GFF2019at 895.190 kb on - strand, within GFF2019at 895.190 kb on - strand, within GFF2019at 895.190 kb on - strand, within GFF2019at 895.190 kb on - strand, within GFF2019at 895.190 kb on - strand, within GFF2019at 895.190 kb on - strand, within GFF2019at 895.190 kb on - strand, within GFF2019at 895.190 kb on - strand, within GFF2019at 895.190 kb on - strand, within GFF2019at 895.190 kb on - strand, within GFF2019at 895.346 kb on + strand, within GFF2019at 895.346 kb on + strand, within GFF2019at 895.346 kb on + strand, within GFF2019at 895.346 kb on + strand, within GFF2019at 895.346 kb on + strand, within GFF2019at 895.346 kb on + strand, within GFF2019at 895.346 kb on + strand, within GFF2019at 895.346 kb on + strand, within GFF2019at 895.346 kb on + strand, within GFF2019at 895.346 kb on + strand, within GFF2019at 895.347 kb on - strand, within GFF2019at 895.347 kb on - strand, within GFF2019at 895.347 kb on - strand, within GFF2019at 895.347 kb on - strand, within GFF2019at 895.347 kb on - strand, within GFF2019at 895.347 kb on - strand, within GFF2019at 895.347 kb on - strand, within GFF2019at 895.347 kb on - strand, within GFF2019at 895.347 kb on - strand, within GFF2019at 895.347 kb on - strand, within GFF2019at 895.358 kb on + strand, within GFF2019at 895.359 kb on - strand, within GFF2019at 895.359 kb on - strand, within GFF2019at 895.359 kb on - strand, within GFF2019at 895.359 kb on - strand, within GFF2019at 895.516 kb on + strandat 895.516 kb on + strandat 895.516 kb on + strandat 895.516 kb on + strandat 895.516 kb on + strandat 895.516 kb on + strandat 895.516 kb on + strandat 895.517 kb on - strandat 895.517 kb on - strandat 895.517 kb on - strandat 895.517 kb on - strandat 895.517 kb on - strandat 895.517 kb on - strandat 895.517 kb on - strandat 895.517 kb on - strandat 895.517 kb on - strandat 895.517 kb on - strandat 895.533 kb on + strandat 895.533 kb on + strandat 895.533 kb on + strandat 895.533 kb on + strandat 895.533 kb on + strandat 895.533 kb on + strandat 895.533 kb on + strandat 895.534 kb on - strandat 895.534 kb on - strandat 895.534 kb on - strandat 895.534 kb on - strandat 895.686 kb on + strand, within GFF2020at 895.686 kb on + strand, within GFF2020at 895.686 kb on + strand, within GFF2020at 895.686 kb on + strand, within GFF2020at 895.686 kb on + strand, within GFF2020at 895.686 kb on + strand, within GFF2020at 895.687 kb on - strand, within GFF2020at 895.687 kb on - strand, within GFF2020at 895.687 kb on - strand, within GFF2020at 895.687 kb on - strand, within GFF2020at 895.687 kb on - strand, within GFF2020at 895.687 kb on - strand, within GFF2020at 895.687 kb on - strand, within GFF2020at 895.687 kb on - strand, within GFF2020at 895.743 kb on + strand, within GFF2020at 895.743 kb on + strand, within GFF2020at 895.743 kb on + strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.768 kb on - strand, within GFF2020at 895.828 kb on - strand, within GFF2020at 896.499 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 1
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893,939 - GFF2018 0.57 -1.8
893,939 - GFF2018 0.57 +0.6
894,158 - GFF2018 0.68 -1.1
894,158 - GFF2018 0.68 -1.1
894,284 - GFF2018 0.74 -1.2
894,481 + GFF2018 0.84 -0.7
894,481 + GFF2018 0.84 -1.1
894,481 + GFF2018 0.84 +0.8
894,481 + GFF2018 0.84 -0.7
894,482 - GFF2018 0.84 -1.5
894,482 - GFF2018 0.84 -1.3
894,784 + -1.3
894,784 + -2.4
894,785 - +0.9
894,785 - -2.0
895,078 + GFF2019 0.29 -0.3
895,078 + GFF2019 0.29 -1.1
895,078 + GFF2019 0.29 -0.2
895,078 + GFF2019 0.29 +0.6
895,078 + GFF2019 0.29 +0.7
895,078 + GFF2019 0.29 -0.6
895,079 - GFF2019 0.30 +0.1
895,079 - GFF2019 0.30 -0.7
895,079 - GFF2019 0.30 -0.6
895,177 + GFF2019 0.45 -0.5
895,177 + GFF2019 0.45 -1.1
895,178 - GFF2019 0.46 +0.1
895,178 - GFF2019 0.46 +0.0
895,178 - GFF2019 0.46 -0.1
895,178 - GFF2019 0.46 +0.1
895,189 + GFF2019 0.47 -0.3
895,190 - GFF2019 0.48 -0.8
895,190 - GFF2019 0.48 +0.9
895,190 - GFF2019 0.48 -0.5
895,190 - GFF2019 0.48 +0.0
895,190 - GFF2019 0.48 +0.3
895,190 - GFF2019 0.48 -0.6
895,190 - GFF2019 0.48 -0.3
895,190 - GFF2019 0.48 -0.3
895,190 - GFF2019 0.48 -0.2
895,190 - GFF2019 0.48 -1.0
895,346 + GFF2019 0.73 +0.5
895,346 + GFF2019 0.73 -2.9
895,346 + GFF2019 0.73 +0.9
895,346 + GFF2019 0.73 -1.0
895,346 + GFF2019 0.73 +0.4
895,346 + GFF2019 0.73 -1.6
895,346 + GFF2019 0.73 -0.1
895,346 + GFF2019 0.73 -0.5
895,346 + GFF2019 0.73 -0.2
895,346 + GFF2019 0.73 +0.8
895,347 - GFF2019 0.73 -1.1
895,347 - GFF2019 0.73 +0.1
895,347 - GFF2019 0.73 -0.8
895,347 - GFF2019 0.73 -0.7
895,347 - GFF2019 0.73 -0.3
895,347 - GFF2019 0.73 +0.3
895,347 - GFF2019 0.73 -0.4
895,347 - GFF2019 0.73 +1.3
895,347 - GFF2019 0.73 -0.7
895,347 - GFF2019 0.73 -0.5
895,358 + GFF2019 0.75 +0.2
895,359 - GFF2019 0.75 -0.1
895,359 - GFF2019 0.75 +0.2
895,359 - GFF2019 0.75 -0.3
895,359 - GFF2019 0.75 -0.6
895,516 + -0.4
895,516 + -0.9
895,516 + +0.8
895,516 + -0.3
895,516 + -0.9
895,516 + +0.2
895,516 + -0.2
895,517 - +0.2
895,517 - -0.6
895,517 - -0.2
895,517 - +0.2
895,517 - +0.9
895,517 - +0.0
895,517 - -0.2
895,517 - +0.2
895,517 - +0.4
895,517 - -0.9
895,533 + +0.4
895,533 + +0.1
895,533 + +0.4
895,533 + +2.6
895,533 + +0.6
895,533 + +0.6
895,533 + +0.2
895,534 - -0.1
895,534 - +0.1
895,534 - -2.0
895,534 - -1.1
895,686 + GFF2020 0.23 -1.3
895,686 + GFF2020 0.23 -0.4
895,686 + GFF2020 0.23 -0.3
895,686 + GFF2020 0.23 +0.3
895,686 + GFF2020 0.23 -0.2
895,686 + GFF2020 0.23 +0.7
895,687 - GFF2020 0.23 +0.0
895,687 - GFF2020 0.23 +0.5
895,687 - GFF2020 0.23 -0.1
895,687 - GFF2020 0.23 -0.2
895,687 - GFF2020 0.23 +0.0
895,687 - GFF2020 0.23 -0.8
895,687 - GFF2020 0.23 -0.3
895,687 - GFF2020 0.23 +1.6
895,743 + GFF2020 0.31 +0.1
895,743 + GFF2020 0.31 +0.1
895,743 + GFF2020 0.31 +0.4
895,744 - GFF2020 0.31 +0.6
895,744 - GFF2020 0.31 +1.0
895,744 - GFF2020 0.31 +0.3
895,744 - GFF2020 0.31 +1.1
895,744 - GFF2020 0.31 -0.2
895,744 - GFF2020 0.31 +0.1
895,744 - GFF2020 0.31 +0.0
895,744 - GFF2020 0.31 -2.1
895,744 - GFF2020 0.31 -2.0
895,744 - GFF2020 0.31 -0.1
895,744 - GFF2020 0.31 +0.1
895,744 - GFF2020 0.31 +0.0
895,744 - GFF2020 0.31 +0.2
895,744 - GFF2020 0.31 +0.3
895,744 - GFF2020 0.31 +0.4
895,744 - GFF2020 0.31 -0.7
895,744 - GFF2020 0.31 -0.7
895,768 - GFF2020 0.35 +0.3
895,828 - GFF2020 0.43 +0.0
896,499 - +0.2

Or see this region's nucleotide sequence