Experiment: Ying_AminoAcid20 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1649 and GFF1650 overlap by 4 nucleotides GFF1650 and GFF1651 overlap by 4 nucleotides GFF1651 and GFF1652 are separated by 7 nucleotides GFF1652 and GFF1653 are separated by 20 nucleotides GFF1653 and GFF1654 are separated by 70 nucleotides
GFF1649 - Acyl dehydratase, MaoC-like domain (EC 2.3.1.8), at 504,604 to 505,050
GFF1649
GFF1650 - blr3308; hypothetical protein, at 505,047 to 505,352
GFF1650
GFF1651 - Ureidoglycolate hydrolase (EC 3.5.3.19), at 505,349 to 505,849
GFF1651
GFF1652 - similar to protocatechuate 4,5-dioxygenase beta chain, at 505,857 to 506,702
GFF1652
GFF1653 - Protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8), at 506,723 to 507,073
GFF1653
GFF1654 - Transcriptional regulator, LysR family, at 507,144 to 508,061
GFF1654
Position (kb) 505
506
507 Strain fitness (log2 ratio) -1
0
1 at 505.246 kb on - strand, within GFF1650 at 505.451 kb on - strand, within GFF1651 at 505.619 kb on + strand, within GFF1651 at 505.620 kb on - strand, within GFF1651 at 505.620 kb on - strand, within GFF1651 at 505.703 kb on + strand, within GFF1651 at 505.912 kb on + strand at 505.912 kb on + strand at 505.913 kb on - strand at 506.215 kb on + strand, within GFF1652 at 506.467 kb on + strand, within GFF1652 at 506.537 kb on - strand, within GFF1652 at 506.838 kb on + strand, within GFF1653 at 506.838 kb on + strand, within GFF1653 at 506.839 kb on - strand, within GFF1653 at 506.841 kb on + strand, within GFF1653 at 506.842 kb on - strand, within GFF1653 at 506.931 kb on + strand, within GFF1653 at 506.931 kb on + strand, within GFF1653 at 506.932 kb on - strand, within GFF1653 at 506.932 kb on - strand, within GFF1653 at 506.932 kb on - strand, within GFF1653 at 506.932 kb on - strand, within GFF1653 at 507.133 kb on + strand at 507.151 kb on + strand at 507.684 kb on + strand, within GFF1654 at 507.684 kb on + strand, within GFF1654 at 507.684 kb on + strand, within GFF1654 at 507.684 kb on + strand, within GFF1654 at 507.684 kb on + strand, within GFF1654 at 507.685 kb on - strand, within GFF1654 at 507.685 kb on - strand, within GFF1654
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 1 remove 505,246 - GFF1650 0.65 +1.7 505,451 - GFF1651 0.20 -1.4 505,619 + GFF1651 0.54 +0.4 505,620 - GFF1651 0.54 -0.1 505,620 - GFF1651 0.54 -0.0 505,703 + GFF1651 0.71 -0.3 505,912 + -0.3 505,912 + +0.1 505,913 - +0.0 506,215 + GFF1652 0.42 +0.3 506,467 + GFF1652 0.72 +0.6 506,537 - GFF1652 0.80 +0.5 506,838 + GFF1653 0.33 -0.5 506,838 + GFF1653 0.33 +0.3 506,839 - GFF1653 0.33 +0.3 506,841 + GFF1653 0.34 -0.3 506,842 - GFF1653 0.34 -0.9 506,931 + GFF1653 0.59 -0.5 506,931 + GFF1653 0.59 +0.0 506,932 - GFF1653 0.60 -0.1 506,932 - GFF1653 0.60 +0.3 506,932 - GFF1653 0.60 +0.4 506,932 - GFF1653 0.60 -0.3 507,133 + +0.1 507,151 + -0.9 507,684 + GFF1654 0.59 +0.1 507,684 + GFF1654 0.59 +0.3 507,684 + GFF1654 0.59 +0.4 507,684 + GFF1654 0.59 -0.1 507,684 + GFF1654 0.59 -0.1 507,685 - GFF1654 0.59 -0.3 507,685 - GFF1654 0.59 -0.1
Or see this region's nucleotide sequence