Experiment: Ying_AminoAcid20 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1618 and GFF1619 are separated by 108 nucleotides GFF1619 and GFF1620 are separated by 7 nucleotides GFF1620 and GFF1621 are separated by 56 nucleotides
GFF1618 - Sensory box histidine kinase/response regulator, at 471,894 to 473,879
GFF1618
GFF1619 - Glutathione S-transferase (EC 2.5.1.18), at 473,988 to 474,677
GFF1619
GFF1620 - Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains, at 474,685 to 475,191
GFF1620
GFF1621 - tRNA nucleotidyltransferase (EC 2.7.7.21) (EC 2.7.7.25), at 475,248 to 476,510
GFF1621
Position (kb) 474
475
476 Strain fitness (log2 ratio) -1
0
1
2 at 473.761 kb on - strand at 473.830 kb on - strand at 473.862 kb on + strand at 473.862 kb on + strand at 473.863 kb on - strand at 473.863 kb on - strand at 473.863 kb on - strand at 473.956 kb on + strand at 473.956 kb on + strand at 473.956 kb on + strand at 473.972 kb on - strand at 474.003 kb on + strand at 474.004 kb on - strand at 474.004 kb on - strand at 474.021 kb on + strand at 474.021 kb on + strand at 474.021 kb on + strand at 474.022 kb on - strand at 474.022 kb on - strand at 474.022 kb on - strand at 474.022 kb on - strand at 474.219 kb on + strand, within GFF1619 at 474.219 kb on + strand, within GFF1619 at 474.219 kb on + strand, within GFF1619 at 474.504 kb on + strand, within GFF1619 at 474.505 kb on - strand, within GFF1619 at 474.505 kb on - strand, within GFF1619 at 474.537 kb on + strand, within GFF1619 at 474.537 kb on + strand, within GFF1619 at 474.537 kb on + strand, within GFF1619 at 474.538 kb on - strand, within GFF1619 at 474.571 kb on - strand, within GFF1619 at 474.571 kb on - strand, within GFF1619 at 474.742 kb on + strand, within GFF1620 at 474.742 kb on + strand, within GFF1620 at 474.742 kb on + strand, within GFF1620 at 474.742 kb on + strand, within GFF1620 at 474.742 kb on + strand, within GFF1620 at 474.742 kb on + strand, within GFF1620 at 474.742 kb on + strand, within GFF1620 at 474.743 kb on - strand, within GFF1620 at 474.863 kb on - strand, within GFF1620 at 474.949 kb on + strand, within GFF1620 at 474.950 kb on - strand, within GFF1620 at 474.950 kb on - strand, within GFF1620 at 475.069 kb on + strand, within GFF1620 at 475.102 kb on + strand, within GFF1620 at 475.102 kb on + strand, within GFF1620 at 475.103 kb on - strand, within GFF1620 at 475.220 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 1 remove 473,761 - +1.8 473,830 - +0.1 473,862 + -0.7 473,862 + -1.0 473,863 - +0.5 473,863 - +0.1 473,863 - +0.1 473,956 + +1.7 473,956 + +1.6 473,956 + +0.9 473,972 - -0.2 474,003 + -0.9 474,004 - +0.6 474,004 - -0.1 474,021 + +1.1 474,021 + +0.4 474,021 + +0.3 474,022 - -0.2 474,022 - +0.7 474,022 - -0.1 474,022 - -0.5 474,219 + GFF1619 0.33 +1.3 474,219 + GFF1619 0.33 -0.7 474,219 + GFF1619 0.33 -0.1 474,504 + GFF1619 0.75 -0.3 474,505 - GFF1619 0.75 -0.4 474,505 - GFF1619 0.75 -0.3 474,537 + GFF1619 0.80 -0.0 474,537 + GFF1619 0.80 -0.6 474,537 + GFF1619 0.80 -0.5 474,538 - GFF1619 0.80 +0.2 474,571 - GFF1619 0.84 +0.3 474,571 - GFF1619 0.84 -0.0 474,742 + GFF1620 0.11 -0.0 474,742 + GFF1620 0.11 -0.4 474,742 + GFF1620 0.11 -0.7 474,742 + GFF1620 0.11 +0.7 474,742 + GFF1620 0.11 -0.4 474,742 + GFF1620 0.11 +0.2 474,742 + GFF1620 0.11 +0.3 474,743 - GFF1620 0.11 -0.0 474,863 - GFF1620 0.35 +0.3 474,949 + GFF1620 0.52 -0.2 474,950 - GFF1620 0.52 -0.9 474,950 - GFF1620 0.52 -0.2 475,069 + GFF1620 0.76 +0.0 475,102 + GFF1620 0.82 -0.7 475,102 + GFF1620 0.82 -1.4 475,103 - GFF1620 0.82 -0.1 475,220 + -0.0
Or see this region's nucleotide sequence