Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF156

Experiment: Ying_AminoAcid20 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF153 and GFF154 overlap by 31 nucleotidesGFF154 and GFF155 are separated by 14 nucleotidesGFF155 and GFF156 are separated by 2 nucleotidesGFF156 and GFF157 are separated by 55 nucleotides GFF153 - Lactoylglutathione lyase (EC 4.4.1.5), at 168,390 to 168,701 GFF153 GFF154 - Lactoylglutathione lyase (EC 4.4.1.5), at 168,671 to 168,826 GFF154 GFF155 - ABC-type multidrug transport system, permease component, at 168,841 to 169,608 GFF155 GFF156 - ABC-type multidrug transport system, ATPase component, at 169,611 to 170,573 GFF156 GFF157 - Radical SAM domain protein, at 170,629 to 171,723 GFF157 Position (kb) 169 170 171Strain fitness (log2 ratio) -1 0 1 2at 168.762 kb on + strand, within GFF154at 168.857 kb on + strandat 168.857 kb on + strandat 168.858 kb on - strandat 168.956 kb on + strand, within GFF155at 168.957 kb on - strand, within GFF155at 168.986 kb on + strand, within GFF155at 168.986 kb on + strand, within GFF155at 168.986 kb on + strand, within GFF155at 168.986 kb on + strand, within GFF155at 168.987 kb on - strand, within GFF155at 169.046 kb on + strand, within GFF155at 169.286 kb on + strand, within GFF155at 169.286 kb on + strand, within GFF155at 169.286 kb on + strand, within GFF155at 169.361 kb on + strand, within GFF155at 169.361 kb on + strand, within GFF155at 169.361 kb on + strand, within GFF155at 169.361 kb on + strand, within GFF155at 169.361 kb on + strand, within GFF155at 169.362 kb on - strand, within GFF155at 169.362 kb on - strand, within GFF155at 169.762 kb on + strand, within GFF156at 169.762 kb on + strand, within GFF156at 169.762 kb on + strand, within GFF156at 169.762 kb on + strand, within GFF156at 169.763 kb on - strand, within GFF156at 169.763 kb on - strand, within GFF156at 169.763 kb on - strand, within GFF156at 169.966 kb on + strand, within GFF156at 169.967 kb on - strand, within GFF156at 169.967 kb on - strand, within GFF156at 169.967 kb on - strand, within GFF156at 169.967 kb on - strand, within GFF156at 170.204 kb on - strand, within GFF156at 170.326 kb on + strand, within GFF156at 170.503 kb on + strandat 170.503 kb on + strandat 170.504 kb on - strandat 170.900 kb on - strand, within GFF157at 170.900 kb on - strand, within GFF157at 170.900 kb on - strand, within GFF157at 170.905 kb on + strand, within GFF157at 170.927 kb on - strand, within GFF157at 170.927 kb on - strand, within GFF157at 171.064 kb on + strand, within GFF157at 171.064 kb on + strand, within GFF157at 171.064 kb on + strand, within GFF157at 171.065 kb on - strand, within GFF157at 171.221 kb on - strand, within GFF157at 171.221 kb on - strand, within GFF157at 171.221 kb on - strand, within GFF157at 171.430 kb on + strand, within GFF157at 171.430 kb on + strand, within GFF157at 171.430 kb on + strand, within GFF157at 171.431 kb on - strand, within GFF157at 171.431 kb on - strand, within GFF157at 171.553 kb on + strand, within GFF157at 171.554 kb on - strand, within GFF157at 171.554 kb on - strand, within GFF157at 171.554 kb on - strand, within GFF157

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 1
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168,762 + GFF154 0.58 -0.2
168,857 + +0.4
168,857 + -0.1
168,858 - +0.2
168,956 + GFF155 0.15 +0.2
168,957 - GFF155 0.15 +0.1
168,986 + GFF155 0.19 -0.2
168,986 + GFF155 0.19 -0.1
168,986 + GFF155 0.19 -0.4
168,986 + GFF155 0.19 +0.5
168,987 - GFF155 0.19 -0.2
169,046 + GFF155 0.27 +1.5
169,286 + GFF155 0.58 -0.7
169,286 + GFF155 0.58 +0.3
169,286 + GFF155 0.58 +0.5
169,361 + GFF155 0.68 -0.5
169,361 + GFF155 0.68 +0.5
169,361 + GFF155 0.68 -0.2
169,361 + GFF155 0.68 +0.1
169,361 + GFF155 0.68 +0.1
169,362 - GFF155 0.68 +1.8
169,362 - GFF155 0.68 +0.0
169,762 + GFF156 0.16 -0.1
169,762 + GFF156 0.16 +1.1
169,762 + GFF156 0.16 +0.5
169,762 + GFF156 0.16 +0.5
169,763 - GFF156 0.16 +0.4
169,763 - GFF156 0.16 +0.4
169,763 - GFF156 0.16 +1.0
169,966 + GFF156 0.37 +0.4
169,967 - GFF156 0.37 -0.0
169,967 - GFF156 0.37 +0.1
169,967 - GFF156 0.37 -0.2
169,967 - GFF156 0.37 +0.0
170,204 - GFF156 0.62 +0.3
170,326 + GFF156 0.74 +0.2
170,503 + -1.3
170,503 + +0.1
170,504 - +0.2
170,900 - GFF157 0.25 +0.1
170,900 - GFF157 0.25 -0.8
170,900 - GFF157 0.25 -0.4
170,905 + GFF157 0.25 +0.9
170,927 - GFF157 0.27 -0.0
170,927 - GFF157 0.27 +0.5
171,064 + GFF157 0.40 +0.0
171,064 + GFF157 0.40 +0.9
171,064 + GFF157 0.40 -0.5
171,065 - GFF157 0.40 -0.1
171,221 - GFF157 0.54 -0.2
171,221 - GFF157 0.54 -1.5
171,221 - GFF157 0.54 -0.2
171,430 + GFF157 0.73 +0.1
171,430 + GFF157 0.73 +0.2
171,430 + GFF157 0.73 -0.1
171,431 - GFF157 0.73 +0.2
171,431 - GFF157 0.73 +0.8
171,553 + GFF157 0.84 +0.2
171,554 - GFF157 0.84 +0.2
171,554 - GFF157 0.84 -0.1
171,554 - GFF157 0.84 -0.5

Or see this region's nucleotide sequence