Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1313

Experiment: Ying_AminoAcid20 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1311 and GFF1312 are separated by 13 nucleotidesGFF1312 and GFF1313 overlap by 4 nucleotidesGFF1313 and GFF1314 overlap by 4 nucleotides GFF1311 - Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-), at 162,323 to 162,985 GFF1311 GFF1312 - Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19), at 162,999 to 163,619 GFF1312 GFF1313 - Histidinol-phosphate aminotransferase (EC 2.6.1.9), at 163,616 to 164,704 GFF1313 GFF1314 - Histidinol dehydrogenase (EC 1.1.1.23), at 164,701 to 166,092 GFF1314 Position (kb) 163 164 165Strain fitness (log2 ratio) -1 0 1at 163.620 kb on - strandat 163.620 kb on - strandat 163.620 kb on - strandat 163.620 kb on - strandat 163.666 kb on + strandat 163.667 kb on - strandat 163.667 kb on - strandat 163.667 kb on - strandat 163.667 kb on - strandat 163.711 kb on + strandat 163.711 kb on + strandat 163.711 kb on + strandat 163.711 kb on + strandat 163.712 kb on - strandat 163.712 kb on - strandat 163.712 kb on - strandat 163.712 kb on - strandat 163.950 kb on + strand, within GFF1313at 163.950 kb on + strand, within GFF1313at 163.951 kb on - strand, within GFF1313at 163.951 kb on - strand, within GFF1313at 163.951 kb on - strand, within GFF1313at 163.951 kb on - strand, within GFF1313at 163.951 kb on - strand, within GFF1313at 163.951 kb on - strand, within GFF1313at 164.004 kb on + strand, within GFF1313at 164.004 kb on + strand, within GFF1313at 164.004 kb on + strand, within GFF1313at 164.005 kb on - strand, within GFF1313at 164.005 kb on - strand, within GFF1313at 164.005 kb on - strand, within GFF1313at 164.005 kb on - strand, within GFF1313at 164.005 kb on - strand, within GFF1313at 164.005 kb on - strand, within GFF1313at 164.005 kb on - strand, within GFF1313at 164.124 kb on + strand, within GFF1313at 164.125 kb on - strand, within GFF1313at 164.125 kb on - strand, within GFF1313at 164.125 kb on - strand, within GFF1313at 164.125 kb on - strand, within GFF1313at 164.235 kb on + strand, within GFF1313at 164.235 kb on + strand, within GFF1313at 164.235 kb on + strand, within GFF1313at 164.235 kb on + strand, within GFF1313at 164.235 kb on + strand, within GFF1313at 164.235 kb on + strand, within GFF1313at 164.235 kb on + strand, within GFF1313at 164.235 kb on + strand, within GFF1313at 164.235 kb on + strand, within GFF1313at 164.235 kb on + strand, within GFF1313at 164.236 kb on - strand, within GFF1313at 164.236 kb on - strand, within GFF1313at 164.236 kb on - strand, within GFF1313at 164.236 kb on - strand, within GFF1313at 164.236 kb on - strand, within GFF1313at 164.236 kb on - strand, within GFF1313at 164.236 kb on - strand, within GFF1313at 164.236 kb on - strand, within GFF1313at 164.236 kb on - strand, within GFF1313at 164.236 kb on - strand, within GFF1313at 164.355 kb on + strand, within GFF1313at 164.355 kb on + strand, within GFF1313at 164.356 kb on - strand, within GFF1313at 164.356 kb on - strand, within GFF1313at 164.356 kb on - strand, within GFF1313at 164.356 kb on - strand, within GFF1313at 164.356 kb on - strand, within GFF1313at 164.356 kb on - strand, within GFF1313at 164.356 kb on - strand, within GFF1313at 164.356 kb on - strand, within GFF1313at 164.356 kb on - strand, within GFF1313at 164.356 kb on - strand, within GFF1313at 164.356 kb on - strand, within GFF1313at 164.356 kb on - strand, within GFF1313at 164.484 kb on + strand, within GFF1313at 164.485 kb on - strand, within GFF1313at 164.485 kb on - strand, within GFF1313at 164.485 kb on - strand, within GFF1313at 164.649 kb on + strandat 164.649 kb on + strandat 164.650 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 1
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163,620 - +1.4
163,620 - +1.1
163,620 - +0.8
163,620 - +0.7
163,666 + -0.5
163,667 - -0.5
163,667 - +0.1
163,667 - +0.2
163,667 - -0.0
163,711 + +0.4
163,711 + +0.2
163,711 + +0.7
163,711 + -0.4
163,712 - -0.1
163,712 - -0.3
163,712 - +0.9
163,712 - +0.2
163,950 + GFF1313 0.31 -0.7
163,950 + GFF1313 0.31 +0.9
163,951 - GFF1313 0.31 +0.2
163,951 - GFF1313 0.31 +0.2
163,951 - GFF1313 0.31 +0.3
163,951 - GFF1313 0.31 -0.3
163,951 - GFF1313 0.31 +1.5
163,951 - GFF1313 0.31 +0.3
164,004 + GFF1313 0.36 +0.1
164,004 + GFF1313 0.36 +0.1
164,004 + GFF1313 0.36 +0.3
164,005 - GFF1313 0.36 -0.6
164,005 - GFF1313 0.36 +0.0
164,005 - GFF1313 0.36 -0.2
164,005 - GFF1313 0.36 -0.3
164,005 - GFF1313 0.36 -0.1
164,005 - GFF1313 0.36 +1.0
164,005 - GFF1313 0.36 -0.2
164,124 + GFF1313 0.47 +0.2
164,125 - GFF1313 0.47 +0.6
164,125 - GFF1313 0.47 +0.7
164,125 - GFF1313 0.47 +1.0
164,125 - GFF1313 0.47 -1.0
164,235 + GFF1313 0.57 +0.2
164,235 + GFF1313 0.57 +0.3
164,235 + GFF1313 0.57 +0.0
164,235 + GFF1313 0.57 -0.3
164,235 + GFF1313 0.57 +0.5
164,235 + GFF1313 0.57 +0.1
164,235 + GFF1313 0.57 -0.1
164,235 + GFF1313 0.57 -0.5
164,235 + GFF1313 0.57 -0.1
164,235 + GFF1313 0.57 +0.0
164,236 - GFF1313 0.57 +0.3
164,236 - GFF1313 0.57 -0.5
164,236 - GFF1313 0.57 +0.0
164,236 - GFF1313 0.57 -0.2
164,236 - GFF1313 0.57 +0.5
164,236 - GFF1313 0.57 +0.3
164,236 - GFF1313 0.57 +0.0
164,236 - GFF1313 0.57 -0.6
164,236 - GFF1313 0.57 -0.0
164,236 - GFF1313 0.57 +0.1
164,355 + GFF1313 0.68 +0.5
164,355 + GFF1313 0.68 +0.3
164,356 - GFF1313 0.68 -0.1
164,356 - GFF1313 0.68 -0.0
164,356 - GFF1313 0.68 +0.1
164,356 - GFF1313 0.68 -0.2
164,356 - GFF1313 0.68 +0.7
164,356 - GFF1313 0.68 +0.3
164,356 - GFF1313 0.68 +0.7
164,356 - GFF1313 0.68 +0.1
164,356 - GFF1313 0.68 +0.7
164,356 - GFF1313 0.68 +0.4
164,356 - GFF1313 0.68 +0.0
164,356 - GFF1313 0.68 -0.6
164,484 + GFF1313 0.80 +1.1
164,485 - GFF1313 0.80 -0.8
164,485 - GFF1313 0.80 +0.4
164,485 - GFF1313 0.80 +0.5
164,649 + +0.5
164,649 + -0.1
164,650 - +0.1

Or see this region's nucleotide sequence