Experiment: Ying_AminoAcid20 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1291 and GFF1292 are separated by 39 nucleotides GFF1292 and GFF1293 are separated by 115 nucleotides GFF1293 and GFF1294 are separated by 32 nucleotides
GFF1291 - ClpXP protease specificity-enhancing factor / Stringent starvation protein B, at 148,885 to 149,418
GFF1291
GFF1292 - Stringent starvation protein A, at 149,458 to 150,069
GFF1292
GFF1293 - ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit, at 150,185 to 150,940
GFF1293
GFF1294 - Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2), at 150,973 to 152,373
GFF1294
Position (kb) 150
151 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 149.327 kb on + strand, within GFF1291 at 149.327 kb on + strand, within GFF1291 at 149.327 kb on + strand, within GFF1291 at 149.327 kb on + strand, within GFF1291 at 149.328 kb on - strand, within GFF1291 at 149.328 kb on - strand, within GFF1291 at 149.378 kb on + strand at 149.379 kb on - strand at 149.379 kb on - strand at 149.379 kb on - strand at 149.459 kb on + strand at 149.459 kb on + strand at 149.459 kb on + strand at 149.459 kb on + strand at 149.459 kb on + strand at 149.459 kb on + strand at 149.460 kb on - strand at 150.084 kb on - strand at 150.205 kb on - strand at 150.316 kb on - strand, within GFF1293 at 150.346 kb on - strand, within GFF1293 at 150.346 kb on - strand, within GFF1293 at 150.535 kb on - strand, within GFF1293 at 150.538 kb on - strand, within GFF1293 at 150.555 kb on + strand, within GFF1293 at 150.562 kb on - strand, within GFF1293 at 150.757 kb on - strand, within GFF1293 at 151.161 kb on - strand, within GFF1294 at 151.161 kb on - strand, within GFF1294 at 151.161 kb on - strand, within GFF1294 at 151.161 kb on - strand, within GFF1294 at 151.410 kb on - strand, within GFF1294 at 151.446 kb on - strand, within GFF1294 at 151.461 kb on - strand, within GFF1294 at 151.521 kb on - strand, within GFF1294 at 151.620 kb on - strand, within GFF1294 at 151.815 kb on - strand, within GFF1294
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 1 remove 149,327 + GFF1291 0.83 +0.0 149,327 + GFF1291 0.83 -0.7 149,327 + GFF1291 0.83 -0.3 149,327 + GFF1291 0.83 -1.6 149,328 - GFF1291 0.83 +1.1 149,328 - GFF1291 0.83 +0.2 149,378 + +0.2 149,379 - +0.6 149,379 - -1.0 149,379 - -0.7 149,459 + +0.4 149,459 + +0.8 149,459 + -0.7 149,459 + -0.4 149,459 + +0.7 149,459 + -0.4 149,460 - +1.2 150,084 - +0.5 150,205 - -0.3 150,316 - GFF1293 0.17 -2.3 150,346 - GFF1293 0.21 -2.1 150,346 - GFF1293 0.21 -1.7 150,535 - GFF1293 0.46 -1.3 150,538 - GFF1293 0.47 -2.3 150,555 + GFF1293 0.49 -1.4 150,562 - GFF1293 0.50 -2.2 150,757 - GFF1293 0.76 -0.5 151,161 - GFF1294 0.13 -2.4 151,161 - GFF1294 0.13 -3.2 151,161 - GFF1294 0.13 +2.1 151,161 - GFF1294 0.13 -2.0 151,410 - GFF1294 0.31 -1.5 151,446 - GFF1294 0.34 -2.2 151,461 - GFF1294 0.35 -1.4 151,521 - GFF1294 0.39 -2.1 151,620 - GFF1294 0.46 -2.8 151,815 - GFF1294 0.60 +0.1
Or see this region's nucleotide sequence