Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF100

Experiment: Ying_AminoAcid20 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 1
109,000	-				+0.9
109,000	-				+0.8
109,060	-				-0.1
109,060	-				-0.1
109,060	-				-0.1
109,066	+				+0.3
109,067	-				-0.8
109,067	-				+0.5
109,115	+				+0.2
109,115	+				-0.8
109,116	-				-0.2
109,844	+		GFF100	0.65	+0.0
109,845	-		GFF100	0.65	-1.1
109,976	-		GFF100	0.76	+0.3
109,976	-		GFF100	0.76	-0.4
109,979	+		GFF100	0.76	+0.7
109,979	+		GFF100	0.76	-0.1
109,979	+		GFF100	0.76	-1.0
109,980	-		GFF100	0.76	-1.4
110,408	-		GFF101	0.16	-1.1
110,584	+		GFF101	0.34	-0.7
110,584	+		GFF101	0.34	+1.8
110,585	-		GFF101	0.34	-0.0
110,585	-		GFF101	0.34	-0.2
110,655	+		GFF101	0.41	+0.5
110,655	+		GFF101	0.41	-0.1
110,656	-		GFF101	0.41	-0.9
110,656	-		GFF101	0.41	+0.0
110,731	+		GFF101	0.49	-0.1
110,732	-		GFF101	0.49	+0.6
110,804	+		GFF101	0.57	+2.5
110,804	+		GFF101	0.57	-0.8
110,804	+		GFF101	0.57	-0.3
110,805	-		GFF101	0.57	+0.6
110,805	-		GFF101	0.57	+0.7
110,810	-		GFF101	0.57	+0.1
110,997	+		GFF101	0.77	+0.5
111,100	+		GFF101	0.87	+0.2
111,100	+		GFF101	0.87	-0.2
111,101	-		GFF101	0.87	-0.1
111,101	-		GFF101	0.87	-0.1
111,101	-		GFF101	0.87	-0.5
111,101	-		GFF101	0.87	-0.9
111,123	+		GFF101	0.90	-0.2