Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04613

Experiment: b-Glucan from Beet (1,2-b-Glucan) 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04611 and BACOVA_04612 are separated by 40 nucleotidesBACOVA_04612 and BACOVA_04613 are separated by 5 nucleotidesBACOVA_04613 and BACOVA_04614 are separated by 70 nucleotides BACOVA_04611: BACOVA_04611 - hypothetical protein, at 6,824 to 6,949 _04611 BACOVA_04612: BACOVA_04612 - LytTr DNA-binding domain protein, at 6,990 to 7,784 _04612 BACOVA_04613: BACOVA_04613 - histidine kinase, at 7,790 to 8,857 _04613 BACOVA_04614: BACOVA_04614 - hypothetical protein, at 8,928 to 9,821 _04614 Position (kb) 7 8 9Strain fitness (log2 ratio) -2 -1 0 1at 6.793 kb on - strandat 6.793 kb on - strandat 6.793 kb on - strandat 6.794 kb on + strandat 6.801 kb on - strandat 6.801 kb on - strandat 6.809 kb on - strandat 6.809 kb on - strandat 6.809 kb on - strandat 6.816 kb on + strandat 6.817 kb on - strandat 6.836 kb on - strandat 7.041 kb on - strandat 7.075 kb on + strand, within BACOVA_04612at 7.115 kb on + strand, within BACOVA_04612at 7.125 kb on - strand, within BACOVA_04612at 7.191 kb on - strand, within BACOVA_04612at 7.200 kb on + strand, within BACOVA_04612at 7.200 kb on + strand, within BACOVA_04612at 7.201 kb on - strand, within BACOVA_04612at 7.221 kb on + strand, within BACOVA_04612at 7.242 kb on + strand, within BACOVA_04612at 7.262 kb on + strand, within BACOVA_04612at 7.267 kb on + strand, within BACOVA_04612at 7.283 kb on + strand, within BACOVA_04612at 7.283 kb on + strand, within BACOVA_04612at 7.283 kb on + strand, within BACOVA_04612at 7.284 kb on - strand, within BACOVA_04612at 7.284 kb on - strand, within BACOVA_04612at 7.284 kb on - strand, within BACOVA_04612at 7.302 kb on + strand, within BACOVA_04612at 7.340 kb on + strand, within BACOVA_04612at 7.434 kb on + strand, within BACOVA_04612at 7.465 kb on - strand, within BACOVA_04612at 7.465 kb on - strand, within BACOVA_04612at 7.489 kb on - strand, within BACOVA_04612at 7.489 kb on - strand, within BACOVA_04612at 7.491 kb on + strand, within BACOVA_04612at 7.492 kb on - strand, within BACOVA_04612at 7.550 kb on - strand, within BACOVA_04612at 7.568 kb on + strand, within BACOVA_04612at 7.578 kb on - strand, within BACOVA_04612at 7.578 kb on - strand, within BACOVA_04612at 7.588 kb on - strand, within BACOVA_04612at 7.588 kb on - strand, within BACOVA_04612at 7.619 kb on + strand, within BACOVA_04612at 7.679 kb on + strand, within BACOVA_04612at 7.680 kb on - strand, within BACOVA_04612at 7.690 kb on - strand, within BACOVA_04612at 7.716 kb on + strandat 7.717 kb on - strandat 7.767 kb on + strandat 7.768 kb on - strandat 7.769 kb on + strandat 7.853 kb on + strandat 7.870 kb on + strandat 7.884 kb on + strandat 7.885 kb on - strandat 7.991 kb on - strand, within BACOVA_04613at 8.033 kb on + strand, within BACOVA_04613at 8.034 kb on - strand, within BACOVA_04613at 8.087 kb on + strand, within BACOVA_04613at 8.088 kb on + strand, within BACOVA_04613at 8.099 kb on + strand, within BACOVA_04613at 8.099 kb on + strand, within BACOVA_04613at 8.099 kb on + strand, within BACOVA_04613at 8.100 kb on - strand, within BACOVA_04613at 8.100 kb on - strand, within BACOVA_04613at 8.100 kb on - strand, within BACOVA_04613at 8.105 kb on + strand, within BACOVA_04613at 8.150 kb on + strand, within BACOVA_04613at 8.150 kb on + strand, within BACOVA_04613at 8.150 kb on + strand, within BACOVA_04613at 8.150 kb on + strand, within BACOVA_04613at 8.150 kb on + strand, within BACOVA_04613at 8.151 kb on - strand, within BACOVA_04613at 8.152 kb on + strand, within BACOVA_04613at 8.206 kb on + strand, within BACOVA_04613at 8.207 kb on - strand, within BACOVA_04613at 8.207 kb on - strand, within BACOVA_04613at 8.207 kb on - strand, within BACOVA_04613at 8.218 kb on + strand, within BACOVA_04613at 8.219 kb on - strand, within BACOVA_04613at 8.219 kb on - strand, within BACOVA_04613at 8.225 kb on + strand, within BACOVA_04613at 8.226 kb on - strand, within BACOVA_04613at 8.229 kb on - strand, within BACOVA_04613at 8.343 kb on - strand, within BACOVA_04613at 8.396 kb on + strand, within BACOVA_04613at 8.415 kb on - strand, within BACOVA_04613at 8.416 kb on + strand, within BACOVA_04613at 8.417 kb on - strand, within BACOVA_04613at 8.438 kb on - strand, within BACOVA_04613at 8.461 kb on + strand, within BACOVA_04613at 8.462 kb on - strand, within BACOVA_04613at 8.484 kb on + strand, within BACOVA_04613at 8.484 kb on + strand, within BACOVA_04613at 8.492 kb on + strand, within BACOVA_04613at 8.515 kb on + strand, within BACOVA_04613at 8.560 kb on + strand, within BACOVA_04613at 8.663 kb on + strand, within BACOVA_04613at 8.691 kb on - strand, within BACOVA_04613at 8.691 kb on - strand, within BACOVA_04613at 8.762 kb on + strandat 8.763 kb on - strandat 8.822 kb on + strandat 8.822 kb on + strandat 8.825 kb on - strandat 8.825 kb on - strandat 8.826 kb on + strandat 8.830 kb on + strandat 8.830 kb on + strandat 8.831 kb on - strandat 8.857 kb on + strandat 8.857 kb on + strandat 8.858 kb on - strandat 8.875 kb on - strandat 8.886 kb on + strandat 8.961 kb on - strandat 9.002 kb on - strandat 9.002 kb on - strandat 9.002 kb on - strandat 9.004 kb on - strandat 9.004 kb on - strandat 9.117 kb on + strand, within BACOVA_04614at 9.118 kb on - strand, within BACOVA_04614at 9.118 kb on - strand, within BACOVA_04614at 9.118 kb on - strand, within BACOVA_04614at 9.118 kb on - strand, within BACOVA_04614at 9.139 kb on + strand, within BACOVA_04614at 9.143 kb on + strand, within BACOVA_04614at 9.207 kb on - strand, within BACOVA_04614at 9.242 kb on - strand, within BACOVA_04614at 9.279 kb on + strand, within BACOVA_04614at 9.294 kb on + strand, within BACOVA_04614at 9.315 kb on + strand, within BACOVA_04614at 9.377 kb on + strand, within BACOVA_04614at 9.440 kb on - strand, within BACOVA_04614at 9.447 kb on + strand, within BACOVA_04614at 9.528 kb on + strand, within BACOVA_04614at 9.595 kb on - strand, within BACOVA_04614at 9.668 kb on + strand, within BACOVA_04614at 9.708 kb on - strand, within BACOVA_04614at 9.783 kb on + strandat 9.811 kb on - strandat 9.826 kb on + strandat 9.827 kb on - strandat 9.842 kb on + strandat 9.856 kb on + strandat 9.856 kb on + strandat 9.856 kb on + strandat 9.857 kb on - strandat 9.857 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction b-Glucan from Beet (1,2-b-Glucan) 2.5 mg/mL (C)
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6,793 - -0.6
6,793 - -0.1
6,793 - -0.2
6,794 + +0.5
6,801 - +0.3
6,801 - -0.8
6,809 - +1.3
6,809 - -0.5
6,809 - -1.8
6,816 + -0.3
6,817 - +0.4
6,836 - -0.9
7,041 - -1.4
7,075 + BACOVA_04612 0.11 -1.3
7,115 + BACOVA_04612 0.16 -0.2
7,125 - BACOVA_04612 0.17 +0.8
7,191 - BACOVA_04612 0.25 +0.2
7,200 + BACOVA_04612 0.26 -1.3
7,200 + BACOVA_04612 0.26 +0.3
7,201 - BACOVA_04612 0.27 -0.3
7,221 + BACOVA_04612 0.29 +0.5
7,242 + BACOVA_04612 0.32 +0.6
7,262 + BACOVA_04612 0.34 -0.9
7,267 + BACOVA_04612 0.35 +0.9
7,283 + BACOVA_04612 0.37 +0.5
7,283 + BACOVA_04612 0.37 -0.4
7,283 + BACOVA_04612 0.37 +0.4
7,284 - BACOVA_04612 0.37 -0.9
7,284 - BACOVA_04612 0.37 +0.8
7,284 - BACOVA_04612 0.37 -1.5
7,302 + BACOVA_04612 0.39 -0.2
7,340 + BACOVA_04612 0.44 -0.6
7,434 + BACOVA_04612 0.56 -0.8
7,465 - BACOVA_04612 0.60 -0.6
7,465 - BACOVA_04612 0.60 -0.4
7,489 - BACOVA_04612 0.63 -0.8
7,489 - BACOVA_04612 0.63 -1.0
7,491 + BACOVA_04612 0.63 +0.0
7,492 - BACOVA_04612 0.63 -0.8
7,550 - BACOVA_04612 0.70 -1.8
7,568 + BACOVA_04612 0.73 -0.2
7,578 - BACOVA_04612 0.74 +0.5
7,578 - BACOVA_04612 0.74 +0.9
7,588 - BACOVA_04612 0.75 +0.0
7,588 - BACOVA_04612 0.75 -1.8
7,619 + BACOVA_04612 0.79 -1.1
7,679 + BACOVA_04612 0.87 +0.2
7,680 - BACOVA_04612 0.87 -0.3
7,690 - BACOVA_04612 0.88 -0.4
7,716 + +0.1
7,717 - -0.3
7,767 + +0.4
7,768 - -0.7
7,769 + +0.8
7,853 + +1.3
7,870 + -0.2
7,884 + -0.4
7,885 - -0.2
7,991 - BACOVA_04613 0.19 -0.5
8,033 + BACOVA_04613 0.23 -0.3
8,034 - BACOVA_04613 0.23 -1.0
8,087 + BACOVA_04613 0.28 -0.9
8,088 + BACOVA_04613 0.28 -0.7
8,099 + BACOVA_04613 0.29 +1.2
8,099 + BACOVA_04613 0.29 -0.6
8,099 + BACOVA_04613 0.29 -0.2
8,100 - BACOVA_04613 0.29 -0.3
8,100 - BACOVA_04613 0.29 -1.5
8,100 - BACOVA_04613 0.29 +0.6
8,105 + BACOVA_04613 0.29 +0.6
8,150 + BACOVA_04613 0.34 +0.6
8,150 + BACOVA_04613 0.34 -0.9
8,150 + BACOVA_04613 0.34 -0.6
8,150 + BACOVA_04613 0.34 -0.5
8,150 + BACOVA_04613 0.34 +0.1
8,151 - BACOVA_04613 0.34 -0.3
8,152 + BACOVA_04613 0.34 -0.0
8,206 + BACOVA_04613 0.39 -0.6
8,207 - BACOVA_04613 0.39 +0.5
8,207 - BACOVA_04613 0.39 -0.5
8,207 - BACOVA_04613 0.39 -0.2
8,218 + BACOVA_04613 0.40 +0.2
8,219 - BACOVA_04613 0.40 -0.9
8,219 - BACOVA_04613 0.40 -0.5
8,225 + BACOVA_04613 0.41 -0.8
8,226 - BACOVA_04613 0.41 -0.3
8,229 - BACOVA_04613 0.41 -1.4
8,343 - BACOVA_04613 0.52 -0.5
8,396 + BACOVA_04613 0.57 -0.3
8,415 - BACOVA_04613 0.59 +0.6
8,416 + BACOVA_04613 0.59 +0.4
8,417 - BACOVA_04613 0.59 -0.7
8,438 - BACOVA_04613 0.61 +1.1
8,461 + BACOVA_04613 0.63 +0.8
8,462 - BACOVA_04613 0.63 +0.1
8,484 + BACOVA_04613 0.65 -1.0
8,484 + BACOVA_04613 0.65 -0.2
8,492 + BACOVA_04613 0.66 -0.2
8,515 + BACOVA_04613 0.68 +0.4
8,560 + BACOVA_04613 0.72 +0.8
8,663 + BACOVA_04613 0.82 -0.5
8,691 - BACOVA_04613 0.84 +0.2
8,691 - BACOVA_04613 0.84 -2.3
8,762 + +0.3
8,763 - +0.5
8,822 + +0.4
8,822 + +0.0
8,825 - -0.4
8,825 - -0.9
8,826 + -0.3
8,830 + -0.3
8,830 + +0.9
8,831 - -0.0
8,857 + +0.0
8,857 + -0.7
8,858 - +0.1
8,875 - +0.2
8,886 + +1.7
8,961 - -0.3
9,002 - -0.6
9,002 - -1.9
9,002 - +0.9
9,004 - -0.4
9,004 - -2.0
9,117 + BACOVA_04614 0.21 -0.3
9,118 - BACOVA_04614 0.21 +0.4
9,118 - BACOVA_04614 0.21 -0.2
9,118 - BACOVA_04614 0.21 -0.7
9,118 - BACOVA_04614 0.21 -1.3
9,139 + BACOVA_04614 0.24 +0.2
9,143 + BACOVA_04614 0.24 -1.0
9,207 - BACOVA_04614 0.31 -0.3
9,242 - BACOVA_04614 0.35 +0.0
9,279 + BACOVA_04614 0.39 -0.6
9,294 + BACOVA_04614 0.41 -1.2
9,315 + BACOVA_04614 0.43 +1.2
9,377 + BACOVA_04614 0.50 -0.6
9,440 - BACOVA_04614 0.57 +0.6
9,447 + BACOVA_04614 0.58 -0.1
9,528 + BACOVA_04614 0.67 -0.6
9,595 - BACOVA_04614 0.75 +1.0
9,668 + BACOVA_04614 0.83 -1.4
9,708 - BACOVA_04614 0.87 -0.8
9,783 + +0.2
9,811 - -1.2
9,826 + +0.1
9,827 - -0.2
9,842 + +0.0
9,856 + +0.9
9,856 + -0.3
9,856 + -1.1
9,857 - +0.4
9,857 - +0.3

Or see this region's nucleotide sequence