Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01597

Experiment: b-Glucan from Beet (1,2-b-Glucan) 2.5 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_01594 and BACOVA_01596 are separated by 32 nucleotidesBACOVA_01596 and BACOVA_01597 overlap by 4 nucleotidesBACOVA_01597 and BACOVA_01598 are separated by 116 nucleotides BACOVA_01594: BACOVA_01594 - hypothetical protein, at 94,800 to 95,294 _01594 BACOVA_01596: BACOVA_01596 - hypothetical protein, at 95,327 to 96,040 _01596 BACOVA_01597: BACOVA_01597 - hypothetical protein, at 96,037 to 96,708 _01597 BACOVA_01598: BACOVA_01598 - hypothetical protein, at 96,825 to 97,664 _01598 Position (kb) 96 97Strain fitness (log2 ratio) -3 -2 -1 0 1at 95.068 kb on + strand, within BACOVA_01594at 95.100 kb on + strand, within BACOVA_01594at 95.100 kb on + strand, within BACOVA_01594at 95.101 kb on - strand, within BACOVA_01594at 95.104 kb on + strand, within BACOVA_01594at 95.114 kb on + strand, within BACOVA_01594at 95.114 kb on + strand, within BACOVA_01594at 95.117 kb on + strand, within BACOVA_01594at 95.152 kb on + strand, within BACOVA_01594at 95.162 kb on + strand, within BACOVA_01594at 95.162 kb on + strand, within BACOVA_01594at 95.163 kb on - strand, within BACOVA_01594at 95.164 kb on + strand, within BACOVA_01594at 95.164 kb on + strand, within BACOVA_01594at 95.165 kb on - strand, within BACOVA_01594at 95.174 kb on + strand, within BACOVA_01594at 95.175 kb on - strand, within BACOVA_01594at 95.192 kb on - strand, within BACOVA_01594at 95.192 kb on - strand, within BACOVA_01594at 95.202 kb on - strand, within BACOVA_01594at 95.226 kb on - strand, within BACOVA_01594at 95.226 kb on - strand, within BACOVA_01594at 95.237 kb on + strand, within BACOVA_01594at 95.257 kb on - strandat 95.264 kb on + strandat 95.264 kb on + strandat 95.332 kb on + strandat 95.333 kb on - strandat 95.333 kb on - strandat 95.333 kb on - strandat 95.356 kb on + strandat 95.377 kb on + strandat 95.378 kb on - strandat 95.378 kb on - strandat 95.378 kb on - strandat 95.378 kb on - strandat 95.379 kb on + strandat 95.380 kb on - strandat 95.387 kb on - strandat 95.413 kb on + strand, within BACOVA_01596at 95.432 kb on + strand, within BACOVA_01596at 95.477 kb on - strand, within BACOVA_01596at 95.478 kb on + strand, within BACOVA_01596at 95.526 kb on + strand, within BACOVA_01596at 95.526 kb on + strand, within BACOVA_01596at 95.585 kb on - strand, within BACOVA_01596at 95.671 kb on + strand, within BACOVA_01596at 95.672 kb on - strand, within BACOVA_01596at 95.690 kb on + strand, within BACOVA_01596at 95.693 kb on + strand, within BACOVA_01596at 95.743 kb on + strand, within BACOVA_01596at 95.758 kb on + strand, within BACOVA_01596at 95.762 kb on + strand, within BACOVA_01596at 95.798 kb on - strand, within BACOVA_01596at 95.801 kb on + strand, within BACOVA_01596at 95.801 kb on + strand, within BACOVA_01596at 95.809 kb on + strand, within BACOVA_01596at 95.913 kb on + strand, within BACOVA_01596at 95.914 kb on - strand, within BACOVA_01596at 95.914 kb on - strand, within BACOVA_01596at 95.915 kb on + strand, within BACOVA_01596at 95.916 kb on - strand, within BACOVA_01596at 95.916 kb on - strand, within BACOVA_01596at 95.917 kb on + strand, within BACOVA_01596at 95.917 kb on + strand, within BACOVA_01596at 95.917 kb on + strand, within BACOVA_01596at 95.918 kb on - strand, within BACOVA_01596at 95.939 kb on + strand, within BACOVA_01596at 95.939 kb on + strand, within BACOVA_01596at 95.940 kb on - strand, within BACOVA_01596at 95.940 kb on - strand, within BACOVA_01596at 95.943 kb on + strand, within BACOVA_01596at 95.943 kb on + strand, within BACOVA_01596at 95.943 kb on + strand, within BACOVA_01596at 95.944 kb on - strand, within BACOVA_01596at 95.944 kb on - strand, within BACOVA_01596at 95.944 kb on - strand, within BACOVA_01596at 95.992 kb on + strandat 95.992 kb on + strandat 95.993 kb on - strandat 95.995 kb on + strandat 95.995 kb on + strandat 95.996 kb on - strandat 96.029 kb on + strandat 96.035 kb on + strandat 96.035 kb on + strandat 96.103 kb on - strandat 96.115 kb on - strand, within BACOVA_01597at 96.130 kb on - strand, within BACOVA_01597at 96.147 kb on - strand, within BACOVA_01597at 96.160 kb on - strand, within BACOVA_01597at 96.188 kb on + strand, within BACOVA_01597at 96.297 kb on + strand, within BACOVA_01597at 96.399 kb on + strand, within BACOVA_01597at 96.412 kb on + strand, within BACOVA_01597at 96.460 kb on - strand, within BACOVA_01597at 96.460 kb on - strand, within BACOVA_01597at 96.461 kb on + strand, within BACOVA_01597at 96.529 kb on - strand, within BACOVA_01597at 96.530 kb on + strand, within BACOVA_01597at 96.530 kb on + strand, within BACOVA_01597at 96.531 kb on - strand, within BACOVA_01597at 96.531 kb on - strand, within BACOVA_01597at 96.544 kb on + strand, within BACOVA_01597at 96.555 kb on + strand, within BACOVA_01597at 96.564 kb on + strand, within BACOVA_01597at 96.565 kb on - strand, within BACOVA_01597at 96.565 kb on - strand, within BACOVA_01597at 96.567 kb on + strand, within BACOVA_01597at 96.568 kb on - strand, within BACOVA_01597at 96.570 kb on + strand, within BACOVA_01597at 96.571 kb on - strand, within BACOVA_01597at 96.580 kb on + strand, within BACOVA_01597at 96.580 kb on + strand, within BACOVA_01597at 96.581 kb on - strand, within BACOVA_01597at 96.581 kb on - strand, within BACOVA_01597at 96.691 kb on + strandat 96.692 kb on - strandat 96.702 kb on + strandat 96.708 kb on + strandat 96.708 kb on + strandat 96.709 kb on - strandat 96.714 kb on - strandat 96.714 kb on - strandat 96.728 kb on + strandat 96.732 kb on + strandat 96.734 kb on + strandat 96.741 kb on - strandat 96.801 kb on + strandat 96.801 kb on + strandat 96.802 kb on - strandat 96.802 kb on - strandat 96.878 kb on + strandat 96.879 kb on - strandat 96.881 kb on - strandat 96.934 kb on + strand, within BACOVA_01598at 96.934 kb on + strand, within BACOVA_01598at 96.935 kb on - strand, within BACOVA_01598at 96.993 kb on - strand, within BACOVA_01598at 97.065 kb on - strand, within BACOVA_01598at 97.128 kb on + strand, within BACOVA_01598at 97.129 kb on - strand, within BACOVA_01598at 97.160 kb on + strand, within BACOVA_01598at 97.160 kb on + strand, within BACOVA_01598at 97.161 kb on - strand, within BACOVA_01598at 97.167 kb on + strand, within BACOVA_01598at 97.167 kb on + strand, within BACOVA_01598at 97.167 kb on + strand, within BACOVA_01598at 97.168 kb on - strand, within BACOVA_01598at 97.205 kb on + strand, within BACOVA_01598at 97.206 kb on - strand, within BACOVA_01598at 97.211 kb on + strand, within BACOVA_01598at 97.232 kb on + strand, within BACOVA_01598at 97.233 kb on - strand, within BACOVA_01598at 97.287 kb on - strand, within BACOVA_01598at 97.324 kb on + strand, within BACOVA_01598at 97.533 kb on + strand, within BACOVA_01598at 97.539 kb on - strand, within BACOVA_01598at 97.601 kb on - strandat 97.603 kb on - strandat 97.603 kb on - strandat 97.615 kb on - strandat 97.664 kb on + strandat 97.665 kb on - strandat 97.665 kb on - strandat 97.665 kb on - strandat 97.670 kb on + strandat 97.678 kb on + strandat 97.683 kb on + strandat 97.686 kb on + strandat 97.687 kb on - strandat 97.699 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction b-Glucan from Beet (1,2-b-Glucan) 2.5 mg/mL (C)
remove
95,068 + BACOVA_01594 0.54 +0.5
95,100 + BACOVA_01594 0.61 -1.2
95,100 + BACOVA_01594 0.61 +0.7
95,101 - BACOVA_01594 0.61 +0.1
95,104 + BACOVA_01594 0.61 -0.4
95,114 + BACOVA_01594 0.63 +0.2
95,114 + BACOVA_01594 0.63 -0.3
95,117 + BACOVA_01594 0.64 -0.4
95,152 + BACOVA_01594 0.71 +0.3
95,162 + BACOVA_01594 0.73 -0.0
95,162 + BACOVA_01594 0.73 +0.1
95,163 - BACOVA_01594 0.73 -0.2
95,164 + BACOVA_01594 0.74 +0.4
95,164 + BACOVA_01594 0.74 -0.4
95,165 - BACOVA_01594 0.74 -0.9
95,174 + BACOVA_01594 0.76 +0.9
95,175 - BACOVA_01594 0.76 +0.8
95,192 - BACOVA_01594 0.79 -0.1
95,192 - BACOVA_01594 0.79 -0.1
95,202 - BACOVA_01594 0.81 +0.8
95,226 - BACOVA_01594 0.86 +0.3
95,226 - BACOVA_01594 0.86 +0.8
95,237 + BACOVA_01594 0.88 +0.1
95,257 - -0.7
95,264 + -1.0
95,264 + -0.6
95,332 + -0.7
95,333 - -1.1
95,333 - +0.1
95,333 - +0.2
95,356 + +0.1
95,377 + -1.1
95,378 - +1.0
95,378 - +0.6
95,378 - +1.1
95,378 - +1.0
95,379 + +0.8
95,380 - -0.1
95,387 - +0.2
95,413 + BACOVA_01596 0.12 -0.6
95,432 + BACOVA_01596 0.15 +0.7
95,477 - BACOVA_01596 0.21 +0.2
95,478 + BACOVA_01596 0.21 -0.7
95,526 + BACOVA_01596 0.28 +0.8
95,526 + BACOVA_01596 0.28 -1.6
95,585 - BACOVA_01596 0.36 -0.1
95,671 + BACOVA_01596 0.48 +1.0
95,672 - BACOVA_01596 0.48 -0.4
95,690 + BACOVA_01596 0.51 +0.6
95,693 + BACOVA_01596 0.51 -0.1
95,743 + BACOVA_01596 0.58 -0.1
95,758 + BACOVA_01596 0.60 +0.2
95,762 + BACOVA_01596 0.61 -0.6
95,798 - BACOVA_01596 0.66 +0.7
95,801 + BACOVA_01596 0.66 +0.6
95,801 + BACOVA_01596 0.66 +1.0
95,809 + BACOVA_01596 0.68 -0.4
95,913 + BACOVA_01596 0.82 -0.7
95,914 - BACOVA_01596 0.82 -0.3
95,914 - BACOVA_01596 0.82 -0.5
95,915 + BACOVA_01596 0.82 +0.6
95,916 - BACOVA_01596 0.82 -0.4
95,916 - BACOVA_01596 0.82 +0.4
95,917 + BACOVA_01596 0.83 +0.5
95,917 + BACOVA_01596 0.83 -0.0
95,917 + BACOVA_01596 0.83 +0.1
95,918 - BACOVA_01596 0.83 +0.8
95,939 + BACOVA_01596 0.86 -0.1
95,939 + BACOVA_01596 0.86 +0.0
95,940 - BACOVA_01596 0.86 +1.0
95,940 - BACOVA_01596 0.86 -0.1
95,943 + BACOVA_01596 0.86 +1.1
95,943 + BACOVA_01596 0.86 +0.2
95,943 + BACOVA_01596 0.86 +0.7
95,944 - BACOVA_01596 0.86 -0.3
95,944 - BACOVA_01596 0.86 -0.0
95,944 - BACOVA_01596 0.86 +1.1
95,992 + -0.1
95,992 + -0.1
95,993 - +0.3
95,995 + -0.4
95,995 + +0.4
95,996 - +0.9
96,029 + -1.9
96,035 + -1.2
96,035 + +0.4
96,103 - -0.2
96,115 - BACOVA_01597 0.12 +0.6
96,130 - BACOVA_01597 0.14 +1.2
96,147 - BACOVA_01597 0.16 +0.1
96,160 - BACOVA_01597 0.18 -0.7
96,188 + BACOVA_01597 0.22 -2.9
96,297 + BACOVA_01597 0.39 -0.0
96,399 + BACOVA_01597 0.54 -0.2
96,412 + BACOVA_01597 0.56 +0.6
96,460 - BACOVA_01597 0.63 +0.6
96,460 - BACOVA_01597 0.63 +0.4
96,461 + BACOVA_01597 0.63 -1.2
96,529 - BACOVA_01597 0.73 +0.8
96,530 + BACOVA_01597 0.73 -1.1
96,530 + BACOVA_01597 0.73 -0.3
96,531 - BACOVA_01597 0.74 +1.7
96,531 - BACOVA_01597 0.74 +0.3
96,544 + BACOVA_01597 0.75 -1.2
96,555 + BACOVA_01597 0.77 -1.8
96,564 + BACOVA_01597 0.78 +0.2
96,565 - BACOVA_01597 0.79 +1.0
96,565 - BACOVA_01597 0.79 +0.7
96,567 + BACOVA_01597 0.79 -0.0
96,568 - BACOVA_01597 0.79 +0.2
96,570 + BACOVA_01597 0.79 +0.8
96,571 - BACOVA_01597 0.79 -0.0
96,580 + BACOVA_01597 0.81 +0.1
96,580 + BACOVA_01597 0.81 -0.8
96,581 - BACOVA_01597 0.81 -0.7
96,581 - BACOVA_01597 0.81 +0.9
96,691 + -1.0
96,692 - +0.9
96,702 + +0.2
96,708 + -0.2
96,708 + -0.5
96,709 - +0.8
96,714 - -0.5
96,714 - -0.5
96,728 + -0.3
96,732 + -0.6
96,734 + +1.0
96,741 - +0.4
96,801 + -0.9
96,801 + -1.0
96,802 - -0.5
96,802 - +1.3
96,878 + +0.5
96,879 - +0.0
96,881 - -1.4
96,934 + BACOVA_01598 0.13 +0.4
96,934 + BACOVA_01598 0.13 -0.5
96,935 - BACOVA_01598 0.13 +0.2
96,993 - BACOVA_01598 0.20 +0.8
97,065 - BACOVA_01598 0.29 -0.3
97,128 + BACOVA_01598 0.36 -0.0
97,129 - BACOVA_01598 0.36 +0.2
97,160 + BACOVA_01598 0.40 -2.5
97,160 + BACOVA_01598 0.40 -0.0
97,161 - BACOVA_01598 0.40 -0.1
97,167 + BACOVA_01598 0.41 -0.3
97,167 + BACOVA_01598 0.41 -1.1
97,167 + BACOVA_01598 0.41 -0.9
97,168 - BACOVA_01598 0.41 -0.9
97,205 + BACOVA_01598 0.45 -1.2
97,206 - BACOVA_01598 0.45 -0.6
97,211 + BACOVA_01598 0.46 -0.4
97,232 + BACOVA_01598 0.48 -1.0
97,233 - BACOVA_01598 0.49 -1.0
97,287 - BACOVA_01598 0.55 -0.2
97,324 + BACOVA_01598 0.59 +0.0
97,533 + BACOVA_01598 0.84 -0.1
97,539 - BACOVA_01598 0.85 -0.2
97,601 - +0.6
97,603 - -0.2
97,603 - -0.3
97,615 - -1.2
97,664 + +0.6
97,665 - +0.6
97,665 - -1.7
97,665 - -0.7
97,670 + -1.3
97,678 + -1.6
97,683 + +0.5
97,686 + -0.0
97,687 - +0.4
97,699 + +0.7

Or see this region's nucleotide sequence