Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00505

Experiment: b-Glucan from Beet (1,2-b-Glucan) 2.5 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_00503 and BACOVA_00505 are separated by 148 nucleotidesBACOVA_00505 and BACOVA_00504 overlap by 50 nucleotidesBACOVA_00504 and BACOVA_00506 are separated by 23 nucleotides BACOVA_00503: BACOVA_00503 - hypothetical protein, at 1,100 to 1,516 _00503 BACOVA_00505: BACOVA_00505 - hypothetical protein, at 1,665 to 1,796 _00505 BACOVA_00504: BACOVA_00504 - hypothetical protein, at 1,747 to 1,959 _00504 BACOVA_00506: BACOVA_00506 - Dyp-type peroxidase family protein, at 1,983 to 2,933 _00506 Position (kb) 1 2Strain fitness (log2 ratio) -3 -2 -1 0 1at 0.704 kb on - strandat 0.728 kb on + strandat 0.728 kb on + strandat 0.729 kb on - strandat 0.729 kb on - strandat 0.729 kb on - strandat 0.742 kb on - strandat 0.792 kb on + strandat 0.812 kb on + strandat 0.817 kb on - strandat 0.817 kb on - strandat 0.817 kb on - strandat 0.844 kb on - strandat 0.844 kb on - strandat 0.847 kb on + strandat 0.848 kb on - strandat 0.972 kb on + strandat 0.991 kb on + strandat 1.026 kb on - strandat 1.052 kb on + strandat 1.053 kb on - strandat 1.115 kb on - strandat 1.116 kb on + strandat 1.116 kb on + strandat 1.128 kb on + strandat 1.146 kb on - strand, within BACOVA_00503at 1.146 kb on - strand, within BACOVA_00503at 1.146 kb on - strand, within BACOVA_00503at 1.148 kb on - strand, within BACOVA_00503at 1.150 kb on + strand, within BACOVA_00503at 1.150 kb on + strand, within BACOVA_00503at 1.151 kb on - strand, within BACOVA_00503at 1.197 kb on + strand, within BACOVA_00503at 1.211 kb on - strand, within BACOVA_00503at 1.226 kb on + strand, within BACOVA_00503at 1.232 kb on + strand, within BACOVA_00503at 1.258 kb on + strand, within BACOVA_00503at 1.262 kb on - strand, within BACOVA_00503at 1.282 kb on + strand, within BACOVA_00503at 1.283 kb on - strand, within BACOVA_00503at 1.290 kb on + strand, within BACOVA_00503at 1.290 kb on + strand, within BACOVA_00503at 1.299 kb on + strand, within BACOVA_00503at 1.305 kb on - strand, within BACOVA_00503at 1.315 kb on + strand, within BACOVA_00503at 1.360 kb on + strand, within BACOVA_00503at 1.360 kb on + strand, within BACOVA_00503at 1.360 kb on + strand, within BACOVA_00503at 1.360 kb on + strand, within BACOVA_00503at 1.360 kb on + strand, within BACOVA_00503at 1.361 kb on - strand, within BACOVA_00503at 1.387 kb on + strand, within BACOVA_00503at 1.388 kb on - strand, within BACOVA_00503at 1.388 kb on - strand, within BACOVA_00503at 1.393 kb on - strand, within BACOVA_00503at 1.403 kb on + strand, within BACOVA_00503at 1.403 kb on + strand, within BACOVA_00503at 1.405 kb on + strand, within BACOVA_00503at 1.454 kb on - strand, within BACOVA_00503at 1.458 kb on + strand, within BACOVA_00503at 1.459 kb on - strand, within BACOVA_00503at 1.523 kb on - strandat 1.547 kb on + strandat 1.548 kb on - strandat 1.551 kb on - strandat 1.555 kb on - strandat 1.596 kb on - strandat 1.604 kb on + strandat 1.605 kb on - strandat 1.605 kb on - strandat 1.605 kb on - strandat 1.628 kb on + strandat 1.649 kb on - strandat 1.681 kb on - strand, within BACOVA_00505at 1.692 kb on - strand, within BACOVA_00505at 1.705 kb on + strand, within BACOVA_00505at 1.753 kb on + strandat 1.761 kb on - strandat 1.761 kb on - strandat 1.761 kb on - strandat 1.781 kb on + strandat 1.782 kb on - strandat 1.839 kb on + strand, within BACOVA_00504at 1.868 kb on + strand, within BACOVA_00504at 1.920 kb on - strand, within BACOVA_00504at 1.930 kb on + strand, within BACOVA_00504at 1.930 kb on + strand, within BACOVA_00504at 1.931 kb on - strand, within BACOVA_00504at 1.934 kb on + strand, within BACOVA_00504at 1.935 kb on - strand, within BACOVA_00504at 1.935 kb on - strand, within BACOVA_00504at 1.957 kb on + strandat 2.001 kb on + strandat 2.049 kb on - strandat 2.052 kb on - strandat 2.052 kb on - strandat 2.052 kb on - strandat 2.093 kb on + strand, within BACOVA_00506at 2.093 kb on + strand, within BACOVA_00506at 2.094 kb on - strand, within BACOVA_00506at 2.094 kb on - strand, within BACOVA_00506at 2.121 kb on - strand, within BACOVA_00506at 2.124 kb on - strand, within BACOVA_00506at 2.152 kb on + strand, within BACOVA_00506at 2.152 kb on + strand, within BACOVA_00506at 2.161 kb on + strand, within BACOVA_00506at 2.162 kb on - strand, within BACOVA_00506at 2.162 kb on - strand, within BACOVA_00506at 2.225 kb on + strand, within BACOVA_00506at 2.229 kb on - strand, within BACOVA_00506at 2.229 kb on - strand, within BACOVA_00506at 2.240 kb on + strand, within BACOVA_00506at 2.292 kb on - strand, within BACOVA_00506at 2.329 kb on - strand, within BACOVA_00506at 2.348 kb on + strand, within BACOVA_00506at 2.360 kb on - strand, within BACOVA_00506at 2.377 kb on + strand, within BACOVA_00506at 2.377 kb on + strand, within BACOVA_00506at 2.378 kb on - strand, within BACOVA_00506at 2.378 kb on - strand, within BACOVA_00506at 2.378 kb on - strand, within BACOVA_00506at 2.428 kb on + strand, within BACOVA_00506at 2.428 kb on - strand, within BACOVA_00506at 2.496 kb on - strand, within BACOVA_00506at 2.496 kb on - strand, within BACOVA_00506at 2.496 kb on - strand, within BACOVA_00506at 2.497 kb on + strand, within BACOVA_00506at 2.497 kb on + strand, within BACOVA_00506at 2.498 kb on - strand, within BACOVA_00506at 2.498 kb on - strand, within BACOVA_00506at 2.498 kb on - strand, within BACOVA_00506at 2.610 kb on + strand, within BACOVA_00506at 2.637 kb on - strand, within BACOVA_00506at 2.652 kb on + strand, within BACOVA_00506at 2.735 kb on + strand, within BACOVA_00506at 2.735 kb on + strand, within BACOVA_00506at 2.736 kb on - strand, within BACOVA_00506at 2.772 kb on - strand, within BACOVA_00506at 2.772 kb on - strand, within BACOVA_00506

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction b-Glucan from Beet (1,2-b-Glucan) 2.5 mg/mL (C)
remove
704 - -0.3
728 + -0.2
728 + +1.4
729 - +0.3
729 - -0.7
729 - +0.3
742 - +0.3
792 + -0.8
812 + -0.8
817 - -1.4
817 - -0.0
817 - +0.2
844 - -1.4
844 - +0.6
847 + -1.5
848 - -0.4
972 + -2.0
991 + -0.5
1,026 - +0.0
1,052 + +0.5
1,053 - -0.6
1,115 - -1.5
1,116 + -1.2
1,116 + +0.6
1,128 + +0.2
1,146 - BACOVA_00503 0.11 -0.1
1,146 - BACOVA_00503 0.11 -0.2
1,146 - BACOVA_00503 0.11 -0.6
1,148 - BACOVA_00503 0.12 +0.3
1,150 + BACOVA_00503 0.12 +0.8
1,150 + BACOVA_00503 0.12 -0.7
1,151 - BACOVA_00503 0.12 -0.5
1,197 + BACOVA_00503 0.23 +0.4
1,211 - BACOVA_00503 0.27 -0.7
1,226 + BACOVA_00503 0.30 +0.4
1,232 + BACOVA_00503 0.32 -1.0
1,258 + BACOVA_00503 0.38 +0.4
1,262 - BACOVA_00503 0.39 -0.2
1,282 + BACOVA_00503 0.44 +0.6
1,283 - BACOVA_00503 0.44 -0.7
1,290 + BACOVA_00503 0.46 -0.8
1,290 + BACOVA_00503 0.46 +1.1
1,299 + BACOVA_00503 0.48 -0.7
1,305 - BACOVA_00503 0.49 -0.7
1,315 + BACOVA_00503 0.52 +0.2
1,360 + BACOVA_00503 0.62 -0.4
1,360 + BACOVA_00503 0.62 +0.4
1,360 + BACOVA_00503 0.62 -0.2
1,360 + BACOVA_00503 0.62 +0.8
1,360 + BACOVA_00503 0.62 +0.7
1,361 - BACOVA_00503 0.63 -1.8
1,387 + BACOVA_00503 0.69 +1.0
1,388 - BACOVA_00503 0.69 -0.0
1,388 - BACOVA_00503 0.69 +0.8
1,393 - BACOVA_00503 0.70 -0.6
1,403 + BACOVA_00503 0.73 +0.2
1,403 + BACOVA_00503 0.73 +0.5
1,405 + BACOVA_00503 0.73 +0.5
1,454 - BACOVA_00503 0.85 -3.0
1,458 + BACOVA_00503 0.86 +1.7
1,459 - BACOVA_00503 0.86 -2.1
1,523 - +0.9
1,547 + +1.7
1,548 - -0.7
1,551 - +0.3
1,555 - +0.4
1,596 - +0.3
1,604 + -1.4
1,605 - -0.4
1,605 - -0.7
1,605 - -0.2
1,628 + -1.1
1,649 - -0.0
1,681 - BACOVA_00505 0.12 -0.8
1,692 - BACOVA_00505 0.20 +0.5
1,705 + BACOVA_00505 0.30 -0.7
1,753 + +0.5
1,761 - -0.3
1,761 - -1.4
1,761 - +0.1
1,781 + +0.2
1,782 - +0.1
1,839 + BACOVA_00504 0.43 +0.5
1,868 + BACOVA_00504 0.57 +0.5
1,920 - BACOVA_00504 0.81 +0.3
1,930 + BACOVA_00504 0.86 -1.4
1,930 + BACOVA_00504 0.86 +0.4
1,931 - BACOVA_00504 0.86 -0.2
1,934 + BACOVA_00504 0.88 -2.0
1,935 - BACOVA_00504 0.88 +1.5
1,935 - BACOVA_00504 0.88 -0.0
1,957 + -1.7
2,001 + +0.2
2,049 - +0.6
2,052 - +0.4
2,052 - -0.8
2,052 - +0.9
2,093 + BACOVA_00506 0.12 -0.3
2,093 + BACOVA_00506 0.12 +1.0
2,094 - BACOVA_00506 0.12 +1.0
2,094 - BACOVA_00506 0.12 +0.2
2,121 - BACOVA_00506 0.15 +0.2
2,124 - BACOVA_00506 0.15 -0.6
2,152 + BACOVA_00506 0.18 -0.5
2,152 + BACOVA_00506 0.18 -1.2
2,161 + BACOVA_00506 0.19 +0.2
2,162 - BACOVA_00506 0.19 -0.1
2,162 - BACOVA_00506 0.19 +0.4
2,225 + BACOVA_00506 0.25 -0.2
2,229 - BACOVA_00506 0.26 -1.1
2,229 - BACOVA_00506 0.26 +0.7
2,240 + BACOVA_00506 0.27 +0.1
2,292 - BACOVA_00506 0.32 -0.2
2,329 - BACOVA_00506 0.36 +0.2
2,348 + BACOVA_00506 0.38 -1.4
2,360 - BACOVA_00506 0.40 -0.2
2,377 + BACOVA_00506 0.41 +0.7
2,377 + BACOVA_00506 0.41 -1.0
2,378 - BACOVA_00506 0.42 +0.3
2,378 - BACOVA_00506 0.42 +0.2
2,378 - BACOVA_00506 0.42 -0.6
2,428 + BACOVA_00506 0.47 -0.8
2,428 - BACOVA_00506 0.47 +0.5
2,496 - BACOVA_00506 0.54 +0.7
2,496 - BACOVA_00506 0.54 +0.3
2,496 - BACOVA_00506 0.54 +0.3
2,497 + BACOVA_00506 0.54 -0.4
2,497 + BACOVA_00506 0.54 -0.2
2,498 - BACOVA_00506 0.54 +0.6
2,498 - BACOVA_00506 0.54 -1.4
2,498 - BACOVA_00506 0.54 -0.0
2,610 + BACOVA_00506 0.66 -1.2
2,637 - BACOVA_00506 0.69 -0.4
2,652 + BACOVA_00506 0.70 +1.4
2,735 + BACOVA_00506 0.79 +0.8
2,735 + BACOVA_00506 0.79 +0.5
2,736 - BACOVA_00506 0.79 +1.0
2,772 - BACOVA_00506 0.83 -1.1
2,772 - BACOVA_00506 0.83 -0.0

Or see this region's nucleotide sequence