Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF97

Experiment: Ying_AminoAcid20 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 1
105,306	-		GFF96	0.33	-0.9
105,306	-		GFF96	0.33	-0.2
105,363	-		GFF96	0.39	+0.2
105,395	+		GFF96	0.42	+0.2
105,465	-		GFF96	0.49	-0.5
105,494	+		GFF96	0.51	+0.5
105,635	+		GFF96	0.65	+1.5
105,636	-		GFF96	0.65	-0.1
106,015	+				+0.1
106,016	-				-0.3
106,067	+				-0.7
106,068	-				-0.3
106,094	-				+0.5
106,117	-				+0.7
106,120	+				+0.5
106,128	-				+0.2
106,212	+				-2.0
106,212	+				+0.7
106,219	+				-0.4
106,233	+				-0.3
106,245	+				-0.4
106,246	-				-0.2
106,269	+				+0.1
106,547	+		GFF97	0.32	+0.3
106,548	-		GFF97	0.32	+1.8
106,727	+		GFF97	0.54	-0.3
106,728	-		GFF97	0.54	+0.1
106,728	-		GFF97	0.54	-0.4
107,254	+		GFF98	0.16	-0.4
107,255	-		GFF98	0.17	-0.4
107,345	-		GFF98	0.27	+0.1
107,345	-		GFF98	0.27	+0.0
107,530	+		GFF98	0.47	-0.6
107,530	+		GFF98	0.47	-0.2
107,530	+		GFF98	0.47	-1.4
107,531	-		GFF98	0.47	-0.0
107,621	-		GFF98	0.57	-0.4
107,666	-		GFF98	0.63	+0.8
107,666	-		GFF98	0.63	-0.6
107,786	-		GFF98	0.76	+0.3
107,786	-		GFF98	0.76	-0.6