Experiment: Ying_AminoAcid20 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF917 and GFF918 are separated by 1 nucleotides GFF918 and GFF919 are separated by 6 nucleotides GFF919 and GFF920 overlap by 41 nucleotides GFF920 and GFF921 overlap by 40 nucleotides
GFF917 - Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4), at 648,610 to 650,613
GFF917
GFF918 - Enoyl-CoA hydratase (EC 4.2.1.17), at 650,615 to 651,415
GFF918
GFF919 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 651,422 to 652,645
GFF919
GFF920 - L-carnitine dehydratase/bile acid-inducible protein F, at 652,605 to 653,210
GFF920
GFF921 - CAIB/BAIF family protein, at 653,171 to 653,797
GFF921
Position (kb) 651
652
653 Strain fitness (log2 ratio) -1
0
1 at 650.435 kb on + strand at 651.011 kb on + strand, within GFF918 at 651.178 kb on + strand, within GFF918 at 651.427 kb on - strand at 651.427 kb on - strand at 651.555 kb on + strand, within GFF919 at 651.786 kb on + strand, within GFF919 at 651.876 kb on + strand, within GFF919 at 652.030 kb on + strand, within GFF919 at 652.090 kb on - strand, within GFF919 at 652.311 kb on + strand, within GFF919 at 652.311 kb on + strand, within GFF919 at 652.569 kb on + strand at 653.093 kb on - strand, within GFF920 at 653.433 kb on + strand, within GFF921 at 653.433 kb on + strand, within GFF921
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 1 remove 650,435 + -0.1 651,011 + GFF918 0.49 +0.5 651,178 + GFF918 0.70 +0.9 651,427 - +0.4 651,427 - -0.8 651,555 + GFF919 0.11 +0.2 651,786 + GFF919 0.30 +0.1 651,876 + GFF919 0.37 -0.8 652,030 + GFF919 0.50 +1.0 652,090 - GFF919 0.55 -1.0 652,311 + GFF919 0.73 +0.8 652,311 + GFF919 0.73 -0.0 652,569 + +0.6 653,093 - GFF920 0.81 +0.5 653,433 + GFF921 0.42 +0.1 653,433 + GFF921 0.42 +0.3
Or see this region's nucleotide sequence