Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF699

Experiment: Ying_AminoAcid20 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF697 and GFF698 overlap by 4 nucleotidesGFF698 and GFF699 are separated by 10 nucleotidesGFF699 and GFF700 are separated by 89 nucleotidesGFF700 and GFF701 overlap by 4 nucleotides GFF697 - Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA, at 376,139 to 377,302 GFF697 GFF698 - Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB, at 377,299 to 378,204 GFF698 GFF699 - Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone, at 378,215 to 378,811 GFF699 GFF700 - Two-component system response regulator QseB, at 378,901 to 379,560 GFF700 GFF701 - Sensory histidine kinase QseC, at 379,557 to 380,894 GFF701 Position (kb) 378 379Strain fitness (log2 ratio) -2 -1 0 1at 377.654 kb on - strand, within GFF698at 377.707 kb on + strand, within GFF698at 377.708 kb on - strand, within GFF698at 377.719 kb on + strand, within GFF698at 377.720 kb on - strand, within GFF698at 377.896 kb on + strand, within GFF698at 377.912 kb on - strand, within GFF698at 377.984 kb on - strand, within GFF698at 378.088 kb on + strand, within GFF698at 378.196 kb on + strandat 378.196 kb on + strandat 378.196 kb on + strandat 378.196 kb on + strandat 378.196 kb on + strandat 378.197 kb on - strandat 378.330 kb on - strand, within GFF699at 378.564 kb on - strand, within GFF699at 378.638 kb on + strand, within GFF699at 378.647 kb on + strand, within GFF699at 378.648 kb on - strand, within GFF699at 378.648 kb on - strand, within GFF699at 378.648 kb on - strand, within GFF699at 378.710 kb on + strand, within GFF699at 378.711 kb on - strand, within GFF699at 378.716 kb on + strand, within GFF699at 378.716 kb on + strand, within GFF699at 378.743 kb on + strand, within GFF699at 378.820 kb on + strandat 378.820 kb on + strandat 378.973 kb on + strand, within GFF700at 378.973 kb on + strand, within GFF700at 378.973 kb on + strand, within GFF700at 378.974 kb on - strand, within GFF700at 379.033 kb on + strand, within GFF700at 379.033 kb on + strand, within GFF700at 379.033 kb on + strand, within GFF700at 379.034 kb on - strand, within GFF700at 379.192 kb on + strand, within GFF700at 379.192 kb on + strand, within GFF700at 379.192 kb on + strand, within GFF700at 379.192 kb on + strand, within GFF700at 379.192 kb on + strand, within GFF700at 379.193 kb on - strand, within GFF700at 379.193 kb on - strand, within GFF700at 379.193 kb on - strand, within GFF700at 379.193 kb on - strand, within GFF700at 379.193 kb on - strand, within GFF700at 379.193 kb on - strand, within GFF700at 379.193 kb on - strand, within GFF700at 379.207 kb on + strand, within GFF700at 379.207 kb on + strand, within GFF700at 379.208 kb on - strand, within GFF700at 379.208 kb on - strand, within GFF700at 379.435 kb on + strand, within GFF700at 379.436 kb on - strand, within GFF700at 379.436 kb on - strand, within GFF700at 379.477 kb on + strand, within GFF700at 379.477 kb on + strand, within GFF700at 379.477 kb on + strand, within GFF700at 379.477 kb on + strand, within GFF700at 379.477 kb on + strand, within GFF700at 379.477 kb on + strand, within GFF700at 379.478 kb on - strand, within GFF700at 379.478 kb on - strand, within GFF700at 379.478 kb on - strand, within GFF700at 379.478 kb on - strand, within GFF700at 379.478 kb on - strand, within GFF700at 379.478 kb on - strand, within GFF700at 379.480 kb on - strand, within GFF700at 379.480 kb on - strand, within GFF700at 379.540 kb on + strandat 379.541 kb on - strandat 379.541 kb on - strandat 379.541 kb on - strandat 379.541 kb on - strandat 379.650 kb on + strandat 379.650 kb on + strandat 379.650 kb on + strandat 379.651 kb on - strandat 379.690 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 1
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377,654 - GFF698 0.39 -2.0
377,707 + GFF698 0.45 -1.4
377,708 - GFF698 0.45 +1.0
377,719 + GFF698 0.46 -0.4
377,720 - GFF698 0.46 -0.4
377,896 + GFF698 0.66 -0.4
377,912 - GFF698 0.68 -1.0
377,984 - GFF698 0.76 -2.0
378,088 + GFF698 0.87 -0.4
378,196 + +0.6
378,196 + +0.7
378,196 + -0.5
378,196 + +0.6
378,196 + -0.7
378,197 - +0.6
378,330 - GFF699 0.19 -1.1
378,564 - GFF699 0.58 -0.2
378,638 + GFF699 0.71 -0.0
378,647 + GFF699 0.72 -0.8
378,648 - GFF699 0.73 -0.6
378,648 - GFF699 0.73 -1.6
378,648 - GFF699 0.73 +0.3
378,710 + GFF699 0.83 +0.7
378,711 - GFF699 0.83 -0.6
378,716 + GFF699 0.84 +0.2
378,716 + GFF699 0.84 -0.6
378,743 + GFF699 0.88 +0.3
378,820 + -0.1
378,820 + -1.0
378,973 + GFF700 0.11 -0.4
378,973 + GFF700 0.11 +1.2
378,973 + GFF700 0.11 +0.0
378,974 - GFF700 0.11 -0.0
379,033 + GFF700 0.20 +0.6
379,033 + GFF700 0.20 -0.6
379,033 + GFF700 0.20 -0.5
379,034 - GFF700 0.20 +0.2
379,192 + GFF700 0.44 -0.6
379,192 + GFF700 0.44 -0.5
379,192 + GFF700 0.44 +0.2
379,192 + GFF700 0.44 +0.4
379,192 + GFF700 0.44 -0.4
379,193 - GFF700 0.44 -0.1
379,193 - GFF700 0.44 -0.0
379,193 - GFF700 0.44 -0.6
379,193 - GFF700 0.44 +1.3
379,193 - GFF700 0.44 +0.1
379,193 - GFF700 0.44 -0.2
379,193 - GFF700 0.44 -0.7
379,207 + GFF700 0.46 -0.4
379,207 + GFF700 0.46 +0.5
379,208 - GFF700 0.47 -0.9
379,208 - GFF700 0.47 -1.2
379,435 + GFF700 0.81 +0.8
379,436 - GFF700 0.81 +0.8
379,436 - GFF700 0.81 +0.3
379,477 + GFF700 0.87 -0.2
379,477 + GFF700 0.87 -0.4
379,477 + GFF700 0.87 -0.4
379,477 + GFF700 0.87 +0.0
379,477 + GFF700 0.87 -0.3
379,477 + GFF700 0.87 -1.1
379,478 - GFF700 0.87 -0.4
379,478 - GFF700 0.87 +0.4
379,478 - GFF700 0.87 -0.3
379,478 - GFF700 0.87 -0.1
379,478 - GFF700 0.87 +0.3
379,478 - GFF700 0.87 -0.1
379,480 - GFF700 0.88 +0.4
379,480 - GFF700 0.88 -0.3
379,540 + -0.2
379,541 - +0.4
379,541 - +0.1
379,541 - +0.3
379,541 - -0.5
379,650 + -0.2
379,650 + -0.8
379,650 + -1.4
379,651 - +0.4
379,690 - -0.5

Or see this region's nucleotide sequence