Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF614

Experiment: Ying_AminoAcid20 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF613 and GFF614 are separated by 91 nucleotidesGFF614 and GFF615 are separated by 94 nucleotidesGFF615 and GFF616 overlap by 4 nucleotides GFF613 - tRNA-i(6)A37 methylthiotransferase, at 290,035 to 291,390 GFF613 GFF614 - COG0012: Predicted GTPase, probable translation, at 291,482 to 291,868 GFF614 GFF615 - Transcriptional regulator, TetR family, at 291,963 to 292,700 GFF615 GFF616 - Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8), at 292,697 to 294,019 GFF616 Position (kb) 291 292Strain fitness (log2 ratio) -2 -1 0 1 2at 290.537 kb on + strand, within GFF613at 290.538 kb on - strand, within GFF613at 290.538 kb on - strand, within GFF613at 290.538 kb on - strand, within GFF613at 290.538 kb on - strand, within GFF613at 290.639 kb on + strand, within GFF613at 290.640 kb on - strand, within GFF613at 290.688 kb on - strand, within GFF613at 290.688 kb on - strand, within GFF613at 290.723 kb on + strand, within GFF613at 290.724 kb on - strand, within GFF613at 290.724 kb on - strand, within GFF613at 290.724 kb on - strand, within GFF613at 290.724 kb on - strand, within GFF613at 290.724 kb on - strand, within GFF613at 290.894 kb on + strand, within GFF613at 290.895 kb on - strand, within GFF613at 290.895 kb on - strand, within GFF613at 290.909 kb on + strand, within GFF613at 290.909 kb on + strand, within GFF613at 290.909 kb on + strand, within GFF613at 290.910 kb on - strand, within GFF613at 290.910 kb on - strand, within GFF613at 290.918 kb on + strand, within GFF613at 290.918 kb on + strand, within GFF613at 290.918 kb on + strand, within GFF613at 291.104 kb on + strand, within GFF613at 291.104 kb on + strand, within GFF613at 291.105 kb on - strand, within GFF613at 291.296 kb on + strandat 291.296 kb on + strandat 291.296 kb on + strandat 291.528 kb on + strand, within GFF614at 291.528 kb on + strand, within GFF614at 291.528 kb on + strand, within GFF614at 291.529 kb on - strand, within GFF614at 291.529 kb on - strand, within GFF614at 291.529 kb on - strand, within GFF614at 291.529 kb on - strand, within GFF614at 291.624 kb on + strand, within GFF614at 291.624 kb on + strand, within GFF614at 291.624 kb on + strand, within GFF614at 291.625 kb on - strand, within GFF614at 291.625 kb on - strand, within GFF614at 291.871 kb on + strandat 291.871 kb on + strandat 291.871 kb on + strandat 291.871 kb on + strandat 291.871 kb on + strandat 291.871 kb on + strandat 291.872 kb on - strandat 291.872 kb on - strandat 291.872 kb on - strandat 291.872 kb on - strandat 291.872 kb on - strandat 291.872 kb on - strandat 291.872 kb on - strandat 291.872 kb on - strandat 292.027 kb on + strandat 292.027 kb on + strandat 292.027 kb on + strandat 292.028 kb on - strandat 292.028 kb on - strandat 292.028 kb on - strandat 292.255 kb on + strand, within GFF615at 292.255 kb on + strand, within GFF615at 292.256 kb on - strand, within GFF615at 292.256 kb on - strand, within GFF615at 292.408 kb on + strand, within GFF615at 292.525 kb on + strand, within GFF615at 292.525 kb on + strand, within GFF615at 292.526 kb on - strand, within GFF615at 292.531 kb on + strand, within GFF615at 292.531 kb on + strand, within GFF615at 292.531 kb on + strand, within GFF615at 292.531 kb on + strand, within GFF615at 292.531 kb on + strand, within GFF615at 292.532 kb on - strand, within GFF615at 292.532 kb on - strand, within GFF615at 292.532 kb on - strand, within GFF615at 292.532 kb on - strand, within GFF615at 292.755 kb on + strandat 292.756 kb on - strandat 292.756 kb on - strandat 292.756 kb on - strandat 292.818 kb on + strandat 292.819 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 1
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290,537 + GFF613 0.37 -1.2
290,538 - GFF613 0.37 +1.4
290,538 - GFF613 0.37 -0.2
290,538 - GFF613 0.37 +1.8
290,538 - GFF613 0.37 -1.7
290,639 + GFF613 0.45 -0.2
290,640 - GFF613 0.45 -0.3
290,688 - GFF613 0.48 -1.1
290,688 - GFF613 0.48 -1.2
290,723 + GFF613 0.51 +0.5
290,724 - GFF613 0.51 -0.3
290,724 - GFF613 0.51 +0.5
290,724 - GFF613 0.51 +0.1
290,724 - GFF613 0.51 -0.4
290,724 - GFF613 0.51 -1.2
290,894 + GFF613 0.63 -0.2
290,895 - GFF613 0.63 +0.3
290,895 - GFF613 0.63 -0.2
290,909 + GFF613 0.64 -0.0
290,909 + GFF613 0.64 +0.1
290,909 + GFF613 0.64 -0.4
290,910 - GFF613 0.65 +0.4
290,910 - GFF613 0.65 +0.6
290,918 + GFF613 0.65 -1.3
290,918 + GFF613 0.65 +1.6
290,918 + GFF613 0.65 -0.0
291,104 + GFF613 0.79 -0.2
291,104 + GFF613 0.79 -0.1
291,105 - GFF613 0.79 -0.6
291,296 + -0.6
291,296 + -1.2
291,296 + -0.6
291,528 + GFF614 0.12 +0.4
291,528 + GFF614 0.12 +0.4
291,528 + GFF614 0.12 +0.2
291,529 - GFF614 0.12 +0.5
291,529 - GFF614 0.12 +0.8
291,529 - GFF614 0.12 -0.3
291,529 - GFF614 0.12 +0.2
291,624 + GFF614 0.37 +0.1
291,624 + GFF614 0.37 +0.9
291,624 + GFF614 0.37 -0.0
291,625 - GFF614 0.37 +0.1
291,625 - GFF614 0.37 -1.1
291,871 + +0.3
291,871 + +1.4
291,871 + -0.1
291,871 + +0.2
291,871 + -0.2
291,871 + +0.2
291,872 - -0.6
291,872 - -0.0
291,872 - -0.0
291,872 - +0.4
291,872 - +0.3
291,872 - +0.1
291,872 - -0.4
291,872 - +0.8
292,027 + -0.0
292,027 + -0.7
292,027 + +0.4
292,028 - -0.3
292,028 - +0.2
292,028 - +0.2
292,255 + GFF615 0.40 -2.1
292,255 + GFF615 0.40 +0.1
292,256 - GFF615 0.40 -1.5
292,256 - GFF615 0.40 +0.0
292,408 + GFF615 0.60 +0.6
292,525 + GFF615 0.76 +0.1
292,525 + GFF615 0.76 -0.1
292,526 - GFF615 0.76 -0.1
292,531 + GFF615 0.77 +0.3
292,531 + GFF615 0.77 -0.2
292,531 + GFF615 0.77 -0.1
292,531 + GFF615 0.77 -0.6
292,531 + GFF615 0.77 -0.1
292,532 - GFF615 0.77 -2.7
292,532 - GFF615 0.77 +1.2
292,532 - GFF615 0.77 -0.2
292,532 - GFF615 0.77 -0.2
292,755 + -0.1
292,756 - +0.3
292,756 - +0.5
292,756 - -0.1
292,818 + +0.4
292,819 - -0.1

Or see this region's nucleotide sequence