Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5695

Experiment: Ying_AminoAcid20 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5693 and GFF5694 are separated by 1 nucleotidesGFF5694 and GFF5695 overlap by 4 nucleotidesGFF5695 and GFF5696 are separated by 2 nucleotidesGFF5696 and GFF5697 are separated by 4 nucleotides GFF5693 - Fatty acid desaturase, at 2,717,586 to 2,718,596 GFF5693 GFF5694 - putative alcohol dehydrogenase related to anaerobic 3-hydroxybenzoate metabolism, at 2,718,598 to 2,719,377 GFF5694 GFF5695 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 2,719,374 to 2,720,123 GFF5695 GFF5696 - PROBABLE TRANSMEMBRANE PROTEIN, at 2,720,126 to 2,721,022 GFF5696 GFF5697 - Creatinine amidohydrolase (EC 3.5.2.10), at 2,721,027 to 2,721,806 GFF5697 Position (kb) 2719 2720 2721Strain fitness (log2 ratio) -1 0 1at 2718.432 kb on + strand, within GFF5693at 2718.433 kb on - strand, within GFF5693at 2719.060 kb on + strand, within GFF5694at 2719.827 kb on + strand, within GFF5695at 2719.828 kb on - strand, within GFF5695at 2720.420 kb on + strand, within GFF5696at 2721.070 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 1
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2,718,432 + GFF5693 0.84 -0.2
2,718,433 - GFF5693 0.84 -0.4
2,719,060 + GFF5694 0.59 -0.7
2,719,827 + GFF5695 0.60 -0.2
2,719,828 - GFF5695 0.61 +0.5
2,720,420 + GFF5696 0.33 +0.8
2,721,070 - -0.5

Or see this region's nucleotide sequence