Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5598

Experiment: Ying_AminoAcid20 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 1
2,613,248	+		GFF5597	0.54	-0.6
2,613,323	+		GFF5597	0.57	+0.2
2,613,323	+		GFF5597	0.57	+0.1
2,613,324	-		GFF5597	0.58	+0.7
2,613,324	-		GFF5597	0.58	-0.5
2,613,324	-		GFF5597	0.58	+0.2
2,613,426	-		GFF5597	0.62	-0.3
2,613,549	-		GFF5597	0.68	+0.4
2,613,549	-		GFF5597	0.68	+0.7
2,613,549	-		GFF5597	0.68	-0.4
2,613,549	-		GFF5597	0.68	-0.1
2,613,864	-		GFF5597	0.83	+0.5
2,613,864	-		GFF5597	0.83	-1.6
2,614,377	-				-0.3
2,616,721	-				+0.1
2,616,723	-				-0.5
2,616,723	-				-0.9
2,616,779	+				-0.5
2,616,780	-				-1.2
2,617,084	+		GFF5599	0.19	+0.9
2,617,084	+		GFF5599	0.19	+0.6
2,617,085	-		GFF5599	0.19	-0.7
2,617,085	-		GFF5599	0.19	+0.2
2,617,085	-		GFF5599	0.19	-0.1
2,617,085	-		GFF5599	0.19	-1.1
2,617,085	-		GFF5599	0.19	+0.5
2,617,172	+		GFF5599	0.28	+0.9
2,617,172	+		GFF5599	0.28	-0.1
2,617,172	+		GFF5599	0.28	-1.1
2,617,172	+		GFF5599	0.28	+2.0
2,617,172	+		GFF5599	0.28	-0.1
2,617,173	-		GFF5599	0.28	-0.2
2,617,173	-		GFF5599	0.28	+0.2
2,617,231	+		GFF5599	0.34	-0.9
2,617,231	+		GFF5599	0.34	-0.2
2,617,231	+		GFF5599	0.34	+0.5
2,617,232	-		GFF5599	0.34	+0.4
2,617,232	-		GFF5599	0.34	-0.1
2,617,232	-		GFF5599	0.34	-0.1
2,617,232	-		GFF5599	0.34	-0.1
2,617,288	+		GFF5599	0.40	-0.0
2,617,288	+		GFF5599	0.40	-0.3
2,617,651	+		GFF5599	0.77	+1.2
2,617,652	-		GFF5599	0.77	-0.1
2,617,652	-		GFF5599	0.77	-0.3
2,617,652	-		GFF5599	0.77	-0.1
2,617,652	-		GFF5599	0.77	+0.2
2,617,652	-		GFF5599	0.77	-0.1
2,617,652	-		GFF5599	0.77	-0.6
2,617,654	+		GFF5599	0.77	-0.7
2,617,654	+		GFF5599	0.77	+0.2
2,617,655	-		GFF5599	0.77	+0.8
2,617,655	-		GFF5599	0.77	-2.1