Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5493

Experiment: Ying_AminoAcid20 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 1
2,495,981	+				+0.3
2,496,036	+				-0.7
2,496,149	+				-0.2
2,496,149	+				+0.2
2,496,149	+				-0.0
2,496,149	+				+0.5
2,496,150	-				-0.5
2,496,150	-				+0.6
2,496,150	-				+0.7
2,496,150	-				+0.5
2,496,150	-				-0.1
2,496,150	-				+0.4
2,496,323	+		GFF5493	0.19	-1.0
2,496,323	+		GFF5493	0.19	+0.1
2,496,323	+		GFF5493	0.19	-0.1
2,496,324	-		GFF5493	0.19	+0.3
2,496,401	+		GFF5493	0.24	-0.3
2,496,401	+		GFF5493	0.24	-0.0
2,496,402	-		GFF5493	0.24	-1.1
2,496,404	+		GFF5493	0.24	-0.4
2,496,405	-		GFF5493	0.24	+0.5
2,496,555	-		GFF5493	0.34	+0.2
2,496,590	+		GFF5493	0.37	-0.1
2,496,590	+		GFF5493	0.37	+1.5
2,496,591	-		GFF5493	0.37	-0.3
2,496,591	-		GFF5493	0.37	-0.7
2,496,671	+		GFF5493	0.42	-1.1
2,496,671	+		GFF5493	0.42	-0.8
2,496,672	-		GFF5493	0.42	-0.1
2,496,735	-		GFF5493	0.47	-0.7
2,496,735	-		GFF5493	0.47	-0.5
2,496,920	+		GFF5493	0.59	-0.2
2,496,920	+		GFF5493	0.59	-0.6
2,496,920	+		GFF5493	0.59	-0.2
2,497,127	+		GFF5493	0.73	-0.2
2,497,127	+		GFF5493	0.73	+0.8
2,497,128	-		GFF5493	0.73	-0.2
2,497,308	-		GFF5493	0.85	+0.2
2,497,442	+				-0.2
2,498,176	-		GFF5494	0.88	+0.0