Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5488

Experiment: Ying_AminoAcid20 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 1
2,489,348	-				-0.7
2,489,348	-				+1.2
2,489,732	+		GFF5487	0.39	-0.2
2,489,783	+		GFF5487	0.45	+0.2
2,489,844	-		GFF5487	0.52	-0.5
2,489,844	-		GFF5487	0.52	-0.4
2,489,844	-		GFF5487	0.52	-0.1
2,490,108	-		GFF5487	0.82	-1.6
2,490,108	-		GFF5487	0.82	+0.2
2,490,191	+				-0.3
2,490,465	+		GFF5488	0.15	-0.0
2,490,471	+		GFF5488	0.16	+0.4
2,490,798	+		GFF5488	0.41	-0.9
2,490,852	+		GFF5488	0.45	-0.5
2,490,852	+		GFF5488	0.45	-0.0
2,490,852	+		GFF5488	0.45	-0.1
2,490,852	+		GFF5488	0.45	-2.3
2,490,852	+		GFF5488	0.45	-2.4
2,490,853	-		GFF5488	0.45	-1.1
2,490,853	-		GFF5488	0.45	-0.2
2,490,873	+		GFF5488	0.47	+0.1
2,490,874	-		GFF5488	0.47	+0.7
2,490,874	-		GFF5488	0.47	+0.5
2,490,943	-		GFF5488	0.52	-0.2
2,491,032	+		GFF5488	0.59	+0.8
2,491,032	+		GFF5488	0.59	-0.1
2,491,032	+		GFF5488	0.59	+0.7
2,491,033	-		GFF5488	0.59	-0.6
2,491,033	-		GFF5488	0.59	-0.1
2,491,165	-		GFF5488	0.69	-1.2
2,491,206	+		GFF5488	0.72	+0.8
2,491,729	-				-0.2
2,492,173	-		GFF5489	0.40	-0.1
2,492,421	+		GFF5489	0.58	+0.5