Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5461

Experiment: Ying_AminoAcid20 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 1
2,463,070	+				-0.9
2,463,070	+				+0.3
2,463,071	-				+0.4
2,463,071	-				-0.3
2,463,071	-				+0.7
2,463,076	+				+0.5
2,463,077	-				-0.0
2,463,077	-				-0.8
2,463,454	-		GFF5460	0.56	+0.3
2,463,552	+		GFF5460	0.73	+0.2
2,463,776	-				+0.4
2,464,192	+		GFF5461	0.52	-1.6
2,464,192	+		GFF5461	0.52	-0.1
2,464,193	-		GFF5461	0.52	+0.1
2,464,193	-		GFF5461	0.52	-0.1
2,464,671	+				+1.1
2,464,672	-				+0.3
2,464,672	-				+0.2
2,464,672	-				+0.4
2,464,672	-				+0.4
2,464,672	-				-0.1
2,464,797	+		GFF5462	0.17	-0.6
2,464,797	+		GFF5462	0.17	-0.1
2,464,798	-		GFF5462	0.17	+1.8
2,464,798	-		GFF5462	0.17	-0.1
2,464,798	-		GFF5462	0.17	+1.1
2,464,849	-		GFF5462	0.22	-0.4
2,464,851	+		GFF5462	0.22	+0.2
2,464,852	-		GFF5462	0.23	+2.0
2,464,852	-		GFF5462	0.23	-0.2
2,464,852	-		GFF5462	0.23	-0.5
2,464,852	-		GFF5462	0.23	+0.1
2,464,852	-		GFF5462	0.23	+0.2
2,464,852	-		GFF5462	0.23	-0.8
2,465,139	+		GFF5462	0.52	+1.7
2,465,140	-		GFF5462	0.52	-0.4
2,465,145	+		GFF5462	0.53	-0.2
2,465,146	-		GFF5462	0.53	-0.7
2,465,146	-		GFF5462	0.53	-0.7
2,465,188	-		GFF5462	0.57	+0.0
2,465,277	+		GFF5462	0.66	+0.1
2,465,277	+		GFF5462	0.66	+0.5
2,465,278	-		GFF5462	0.66	+0.8
2,465,527	-				+0.9
2,465,615	+				-0.5
2,465,615	+				-0.9
2,465,615	+				-0.2
2,465,615	+				+1.9
2,465,615	+				+0.1
2,465,616	-				+0.6
2,465,616	-				-0.5