Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5320

Experiment: Ying_AminoAcid20 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 1
2,325,676	+		GFF5318	0.17	-0.3
2,325,677	-		GFF5318	0.18	-0.1
2,325,677	-		GFF5318	0.18	-0.9
2,325,677	-		GFF5318	0.18	+0.1
2,325,677	-		GFF5318	0.18	-0.5
2,325,688	+		GFF5318	0.21	+0.0
2,325,688	+		GFF5318	0.21	-0.3
2,325,688	+		GFF5318	0.21	-0.3
2,325,689	-		GFF5318	0.21	+0.0
2,325,844	+		GFF5318	0.64	+0.3
2,325,892	+		GFF5318	0.77	-0.2
2,325,892	+		GFF5318	0.77	-1.0
2,325,892	+		GFF5318	0.77	+0.8
2,325,892	+		GFF5318	0.77	-0.4
2,325,893	-		GFF5318	0.77	-1.0
2,325,893	-		GFF5318	0.77	-0.0
2,325,893	-		GFF5318	0.77	-0.1
2,325,893	-		GFF5318	0.77	-0.0
2,325,898	+		GFF5318	0.79	-0.0
2,325,899	-		GFF5318	0.79	-0.3
2,325,899	-		GFF5318	0.79	-0.6
2,326,328	-		GFF5319	0.76	+0.5
2,326,392	+				+0.4
2,326,743	-		GFF5320	0.63	-0.1
2,326,756	-		GFF5320	0.67	+0.6
2,327,100	+				+1.2
2,327,100	+				-0.9
2,327,101	-				-0.1
2,327,226	+		GFF5322	0.48	-0.2
2,327,227	-		GFF5322	0.48	-0.1
2,327,406	-				+0.2
2,327,606	+		GFF5323	0.86	-0.2
2,327,607	-		GFF5323	0.87	+1.3
2,327,654	+				+0.6
2,327,654	+				+0.6
2,327,654	+				-0.2