Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5260

Experiment: Ying_AminoAcid20 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 1
2,274,758	+				+0.5
2,274,758	+				+0.1
2,274,759	-				-0.6
2,274,759	-				+0.3
2,274,953	+		GFF5259	0.24	-0.1
2,274,954	-		GFF5259	0.24	+0.6
2,275,061	+		GFF5259	0.35	-0.7
2,275,061	+		GFF5259	0.35	-0.2
2,275,062	-		GFF5259	0.35	+0.3
2,275,136	+		GFF5259	0.42	+0.2
2,275,136	+		GFF5259	0.42	-0.3
2,275,137	-		GFF5259	0.42	+0.1
2,275,247	+		GFF5259	0.53	-0.0
2,275,248	-		GFF5259	0.53	-0.9
2,275,248	-		GFF5259	0.53	+1.4
2,275,272	-		GFF5259	0.56	+0.8
2,275,445	+		GFF5259	0.73	+0.1
2,275,556	+		GFF5259	0.84	-0.2
2,275,556	+		GFF5259	0.84	-0.1
2,275,556	+		GFF5259	0.84	+0.2
2,275,557	-		GFF5259	0.84	+0.1
2,275,557	-		GFF5259	0.84	+1.0
2,275,557	-		GFF5259	0.84	+0.7
2,275,577	+		GFF5259	0.86	-0.7
2,275,578	-		GFF5259	0.86	-0.4
2,275,643	+				-0.6
2,276,107	+		GFF5260	0.68	+1.0
2,276,107	+		GFF5260	0.68	-0.2
2,276,134	+		GFF5260	0.73	+0.2
2,276,134	+		GFF5260	0.73	+1.7
2,276,135	-		GFF5260	0.73	-0.3
2,276,700	-		GFF5261	0.70	-0.0
2,276,700	-		GFF5261	0.70	+0.9
2,276,700	-		GFF5261	0.70	+0.5
2,276,898	+				-0.4
2,276,955	+				-0.8