Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4989

Experiment: Ying_AminoAcid20 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 1
2,004,865	+		GFF4987	0.53	-0.4
2,004,865	+		GFF4987	0.53	+0.6
2,004,974	-		GFF4987	0.63	-0.2
2,004,974	-		GFF4987	0.63	-0.4
2,005,462	-				+1.0
2,005,794	-				+1.4
2,006,156	+		GFF4989	0.26	-1.1
2,006,159	+		GFF4989	0.26	+1.8
2,006,160	-		GFF4989	0.26	-0.2
2,006,160	-		GFF4989	0.26	+0.4
2,006,160	-		GFF4989	0.26	-0.6
2,006,160	-		GFF4989	0.26	+0.0
2,006,319	-		GFF4989	0.39	+0.5
2,006,528	+		GFF4989	0.55	+0.4
2,006,528	+		GFF4989	0.55	+1.1
2,006,528	+		GFF4989	0.55	+0.3
2,006,528	+		GFF4989	0.55	-0.2
2,006,528	+		GFF4989	0.55	-0.1
2,007,140	-				-0.1
2,007,528	-		GFF4990	0.47	+0.4
2,007,605	+		GFF4990	0.56	-0.3
2,007,606	-		GFF4990	0.56	-0.1
2,007,606	-		GFF4990	0.56	-0.4
2,007,606	-		GFF4990	0.56	+0.3
2,007,828	+		GFF4990	0.80	+0.4
2,007,885	-		GFF4990	0.86	-0.8