Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4706

Experiment: Ying_AminoAcid20 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 1
1,658,007	-		GFF4705	0.35	-0.4
1,658,123	+		GFF4705	0.48	-0.5
1,658,123	+		GFF4705	0.48	-0.4
1,659,051	+		GFF4706	0.36	-0.2
1,659,222	+		GFF4706	0.50	-0.2
1,659,405	+		GFF4706	0.66	+0.3
1,659,405	+		GFF4706	0.66	-0.1
1,659,405	+		GFF4706	0.66	+0.6
1,659,406	-		GFF4706	0.66	-0.1
1,659,406	-		GFF4706	0.66	-0.2
1,659,406	-		GFF4706	0.66	+0.4
1,659,406	-		GFF4706	0.66	-0.1
1,659,406	-		GFF4706	0.66	+0.9
1,659,580	-		GFF4706	0.81	+0.4
1,659,673	-		GFF4706	0.89	-0.5
1,659,685	-		GFF4706	0.90	+0.3
1,659,911	+				-0.7
1,659,911	+				-0.0
1,659,912	-				-0.3
1,659,912	-				+0.1
1,659,960	-		GFF4707	0.14	+0.2
1,660,130	+		GFF4707	0.28	+0.3
1,660,131	-		GFF4707	0.28	-0.6
1,660,131	-		GFF4707	0.28	-0.2
1,660,421	+		GFF4707	0.52	-0.4
1,660,421	+		GFF4707	0.52	+1.0
1,660,422	-		GFF4707	0.52	-0.3
1,660,439	+		GFF4707	0.54	-0.4
1,660,440	-		GFF4707	0.54	-0.7
1,660,440	-		GFF4707	0.54	-1.0
1,660,440	-		GFF4707	0.54	+0.2
1,660,607	+		GFF4707	0.68	-0.3
1,660,607	+		GFF4707	0.68	-0.0
1,660,608	-		GFF4707	0.68	+0.1
1,660,608	-		GFF4707	0.68	+0.2
1,660,765	+		GFF4707	0.81	-0.6
1,660,766	-		GFF4707	0.81	+0.5
1,660,766	-		GFF4707	0.81	+0.2