Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4678

Experiment: Ying_AminoAcid20 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 1
1,626,277	+		GFF4677	0.18	-0.1
1,626,277	+		GFF4677	0.18	+0.3
1,626,277	+		GFF4677	0.18	-0.3
1,626,277	+		GFF4677	0.18	-1.6
1,626,277	+		GFF4677	0.18	-0.0
1,626,277	+		GFF4677	0.18	-0.3
1,626,277	+		GFF4677	0.18	+0.3
1,626,277	+		GFF4677	0.18	-0.0
1,626,277	+		GFF4677	0.18	-1.4
1,626,278	-		GFF4677	0.18	-0.3
1,626,278	-		GFF4677	0.18	-1.0
1,626,278	-		GFF4677	0.18	+0.7
1,626,280	+		GFF4677	0.18	-0.0
1,626,280	+		GFF4677	0.18	+0.2
1,626,281	-		GFF4677	0.18	-0.2
1,626,292	+		GFF4677	0.19	-0.2
1,626,292	+		GFF4677	0.19	+0.0
1,626,292	+		GFF4677	0.19	-0.3
1,626,292	+		GFF4677	0.19	-0.3
1,626,293	-		GFF4677	0.19	-0.1
1,626,391	+		GFF4677	0.29	+0.3
1,626,392	-		GFF4677	0.29	+0.3
1,626,580	+		GFF4677	0.48	-0.6
1,626,581	-		GFF4677	0.48	-1.4
1,626,581	-		GFF4677	0.48	-1.1
1,626,602	-		GFF4677	0.50	+0.0
1,626,602	-		GFF4677	0.50	-0.3
1,626,602	-		GFF4677	0.50	-0.3
1,626,602	-		GFF4677	0.50	-0.2
1,626,662	-		GFF4677	0.56	+1.5
1,626,922	+		GFF4677	0.82	-0.2
1,626,922	+		GFF4677	0.82	-0.3
1,626,923	-		GFF4677	0.82	-0.9
1,627,184	+				+0.2
1,627,184	+				-0.7
1,627,184	+				+0.3
1,627,184	+				-0.4
1,627,184	+				+0.2
1,627,184	+				+0.2
1,627,184	+				+0.4
1,627,184	+				+0.4
1,627,185	-				+0.4
1,627,185	-				-0.3
1,627,185	-				-0.7
1,627,185	-				+0.3
1,627,253	+				+0.5
1,627,340	+				+0.5
1,627,341	-				-0.7
1,627,341	-				-0.4
1,627,341	-				-1.2
1,627,341	-				-0.9
1,627,391	+		GFF4678	0.10	-0.4
1,627,391	+		GFF4678	0.10	-0.2
1,627,391	+		GFF4678	0.10	+0.4
1,627,392	-		GFF4678	0.10	-0.3
1,627,691	+		GFF4678	0.24	+1.0
1,627,692	-		GFF4678	0.24	-0.4
1,627,692	-		GFF4678	0.24	-0.6
1,627,844	+		GFF4678	0.31	-0.6
1,627,844	+		GFF4678	0.31	+0.3
1,627,844	+		GFF4678	0.31	+0.2
1,627,845	-		GFF4678	0.31	+1.4
1,627,845	-		GFF4678	0.31	-0.1
1,627,955	+		GFF4678	0.36	+0.2
1,627,956	-		GFF4678	0.37	+0.2
1,627,956	-		GFF4678	0.37	-0.3
1,627,956	-		GFF4678	0.37	-0.1
1,628,048	+		GFF4678	0.41	+0.2
1,628,048	+		GFF4678	0.41	-0.4
1,628,048	+		GFF4678	0.41	-0.0
1,628,048	+		GFF4678	0.41	-0.0
1,628,049	-		GFF4678	0.41	+0.8
1,628,049	-		GFF4678	0.41	-0.1
1,628,051	+		GFF4678	0.41	+0.5
1,628,051	+		GFF4678	0.41	-1.4
1,628,051	+		GFF4678	0.41	-1.2
1,628,051	+		GFF4678	0.41	-0.7
1,628,051	+		GFF4678	0.41	+0.1
1,628,052	-		GFF4678	0.41	-0.1
1,628,052	-		GFF4678	0.41	+0.5
1,628,052	-		GFF4678	0.41	+1.2
1,628,052	-		GFF4678	0.41	-0.0
1,628,088	-		GFF4678	0.43	-0.3
1,628,156	+		GFF4678	0.46	+1.1
1,628,156	+		GFF4678	0.46	+1.3
1,628,156	+		GFF4678	0.46	+0.2
1,628,156	+		GFF4678	0.46	-0.1
1,628,232	-		GFF4678	0.49	-0.5
1,628,232	-		GFF4678	0.49	+0.0
1,628,232	-		GFF4678	0.49	+0.2
1,628,264	+		GFF4678	0.51	-0.5
1,628,265	-		GFF4678	0.51	+0.2
1,628,265	-		GFF4678	0.51	-0.1
1,628,265	-		GFF4678	0.51	+0.3
1,628,265	-		GFF4678	0.51	+1.5
1,628,315	+		GFF4678	0.53	-0.2
1,628,316	-		GFF4678	0.53	-0.1
1,628,363	+		GFF4678	0.56	+0.4
1,628,364	-		GFF4678	0.56	-0.4
1,628,364	-		GFF4678	0.56	+0.1
1,628,364	-		GFF4678	0.56	-0.3
1,628,462	+		GFF4678	0.60	+0.2
1,628,463	-		GFF4678	0.60	+1.6
1,628,463	-		GFF4678	0.60	+0.0
1,628,519	+		GFF4678	0.63	-0.2
1,628,520	-		GFF4678	0.63	-0.2
1,628,520	-		GFF4678	0.63	-0.5
1,628,520	-		GFF4678	0.63	-0.5
1,628,520	-		GFF4678	0.63	+0.4
1,628,520	-		GFF4678	0.63	+0.8
1,628,520	-		GFF4678	0.63	+0.4
1,628,847	-		GFF4678	0.78	-0.1
1,628,930	+		GFF4678	0.82	+0.1
1,628,930	+		GFF4678	0.82	-0.0
1,628,930	+		GFF4678	0.82	+0.6
1,629,304	+				-0.6
1,629,306	-				+0.0
1,629,666	+				-0.4
1,629,667	-				-0.5
1,629,667	-				+0.6
1,629,830	+				-0.1
1,629,830	+				-1.8
1,629,996	-		GFF4679	0.27	-0.2