Experiment: Ying_AminoAcid20 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF461 and GFF462 are separated by 98 nucleotides GFF462 and GFF463 overlap by 4 nucleotides GFF463 and GFF464 are separated by 98 nucleotides GFF464 and GFF465 are separated by 2 nucleotides
GFF461 - Transcriptional regulator, LysR family, at 126,066 to 126,998
GFF461
GFF462 - FIG074102: hypothetical protein, at 127,097 to 127,900
GFF462
GFF463 - Transcriptional regulator, GntR family, at 127,897 to 128,553
GFF463
GFF464 - Isochorismatase (EC 3.3.2.1), at 128,652 to 129,320
GFF464
GFF465 - ABC transporter ATP-binding protein, at 129,323 to 130,891
GFF465
Position (kb) 127
128
129 Strain fitness (log2 ratio) -1
0
1 at 127.041 kb on + strand at 127.042 kb on - strand at 127.317 kb on + strand, within GFF462 at 127.328 kb on + strand, within GFF462 at 127.329 kb on - strand, within GFF462 at 127.452 kb on - strand, within GFF462 at 127.452 kb on - strand, within GFF462 at 127.452 kb on - strand, within GFF462 at 127.605 kb on - strand, within GFF462 at 128.343 kb on - strand, within GFF463 at 128.550 kb on - strand at 128.761 kb on + strand, within GFF464 at 128.761 kb on + strand, within GFF464 at 128.761 kb on + strand, within GFF464 at 128.762 kb on - strand, within GFF464 at 128.914 kb on + strand, within GFF464 at 129.007 kb on - strand, within GFF464 at 129.290 kb on - strand at 129.290 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 1 remove 127,041 + -0.4 127,042 - -0.2 127,317 + GFF462 0.27 -0.3 127,328 + GFF462 0.29 +0.7 127,329 - GFF462 0.29 +0.7 127,452 - GFF462 0.44 +0.2 127,452 - GFF462 0.44 +0.5 127,452 - GFF462 0.44 +0.1 127,605 - GFF462 0.63 -0.4 128,343 - GFF463 0.68 -0.7 128,550 - -0.2 128,761 + GFF464 0.16 -0.3 128,761 + GFF464 0.16 -0.2 128,761 + GFF464 0.16 +0.4 128,762 - GFF464 0.16 +0.8 128,914 + GFF464 0.39 +0.2 129,007 - GFF464 0.53 -1.2 129,290 - +1.1 129,290 - +0.2
Or see this region's nucleotide sequence