Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4545

Experiment: Ying_AminoAcid20 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 1
1,473,872	+		GFF4544	0.49	+0.0
1,473,873	-		GFF4544	0.49	+0.7
1,474,599	+				+0.3
1,474,954	+		GFF4545	0.10	-0.0
1,474,954	+		GFF4545	0.10	-0.1
1,474,954	+		GFF4545	0.10	+0.2
1,474,954	+		GFF4545	0.10	+0.1
1,474,954	+		GFF4545	0.10	+0.0
1,474,955	-		GFF4545	0.10	-0.1
1,474,955	-		GFF4545	0.10	+0.6
1,474,955	-		GFF4545	0.10	+1.6
1,474,955	-		GFF4545	0.10	+1.6
1,474,955	-		GFF4545	0.10	+0.3
1,474,955	-		GFF4545	0.10	+0.1
1,474,958	-		GFF4545	0.11	+1.1
1,475,227	+		GFF4545	0.35	-0.3
1,475,227	+		GFF4545	0.35	+0.3
1,475,228	-		GFF4545	0.35	+0.6
1,475,245	+		GFF4545	0.37	+0.4
1,475,245	+		GFF4545	0.37	+0.2
1,475,245	+		GFF4545	0.37	+1.0
1,475,245	+		GFF4545	0.37	+0.0
1,475,246	-		GFF4545	0.37	-0.0
1,475,246	-		GFF4545	0.37	-0.0
1,475,246	-		GFF4545	0.37	-0.5
1,475,246	-		GFF4545	0.37	-0.3
1,475,246	-		GFF4545	0.37	+0.5
1,475,431	+		GFF4545	0.54	+0.5
1,475,431	+		GFF4545	0.54	-0.7
1,475,431	+		GFF4545	0.54	+0.6
1,475,431	+		GFF4545	0.54	-0.3
1,475,431	+		GFF4545	0.54	-0.8
1,475,431	+		GFF4545	0.54	-1.0
1,475,431	+		GFF4545	0.54	-0.3
1,475,432	-		GFF4545	0.54	-0.0
1,475,432	-		GFF4545	0.54	-0.5
1,475,432	-		GFF4545	0.54	-0.2
1,475,432	-		GFF4545	0.54	-0.3
1,475,432	-		GFF4545	0.54	+1.1
1,475,569	+		GFF4545	0.67	-0.6
1,475,569	+		GFF4545	0.67	+0.4
1,475,569	+		GFF4545	0.67	+0.1
1,475,569	+		GFF4545	0.67	-0.2
1,475,569	+		GFF4545	0.67	+1.0
1,475,570	-		GFF4545	0.67	-0.3
1,475,570	-		GFF4545	0.67	-0.4
1,475,611	+		GFF4545	0.70	+0.1
1,475,611	+		GFF4545	0.70	+0.2
1,475,611	+		GFF4545	0.70	-0.2
1,475,611	+		GFF4545	0.70	-0.5
1,475,612	-		GFF4545	0.71	-0.1
1,475,612	-		GFF4545	0.71	+0.1
1,475,803	+		GFF4545	0.88	-0.2
1,475,803	+		GFF4545	0.88	-0.3
1,475,803	+		GFF4545	0.88	-0.2
1,475,803	+		GFF4545	0.88	+0.0
1,475,804	-		GFF4545	0.88	+0.1
1,475,804	-		GFF4545	0.88	+0.2
1,475,875	+				-1.0
1,475,875	+				-0.3
1,475,875	+				+0.2
1,475,876	-				+0.1
1,475,876	-				+0.1
1,475,876	-				-0.1
1,475,876	-				+1.0
1,475,876	-				+0.2
1,476,027	-				-0.1
1,476,060	+				+0.1
1,476,061	-				-0.4
1,476,139	-				+0.1
1,476,139	-				-0.3
1,476,139	-				+0.6
1,476,139	-				-0.3
1,476,192	+				+0.3
1,476,192	+				-0.4
1,476,192	+				-0.1
1,476,192	+				-0.4
1,476,193	-				-0.2
1,476,193	-				+0.2
1,476,193	-				+0.0
1,476,210	+				+0.6
1,476,210	+				+0.3
1,476,211	-				-0.9