Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4319

Experiment: Ying_AminoAcid20 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 1
1,246,092	+		GFF4318	0.11	+0.0
1,246,407	+		GFF4318	0.44	+0.1
1,246,407	+		GFF4318	0.44	+0.5
1,246,407	+		GFF4318	0.44	-0.2
1,246,408	-		GFF4318	0.44	+0.3
1,246,408	-		GFF4318	0.44	+1.1
1,246,495	-		GFF4318	0.53	+0.1
1,246,495	-		GFF4318	0.53	-1.4
1,246,647	+		GFF4318	0.68	+0.4
1,246,648	-		GFF4318	0.69	-0.3
1,246,648	-		GFF4318	0.69	-0.0
1,246,653	+		GFF4318	0.69	+0.2
1,246,653	+		GFF4318	0.69	-0.1
1,246,653	+		GFF4318	0.69	+0.1
1,246,653	+		GFF4318	0.69	+0.2
1,246,654	-		GFF4318	0.69	+0.1
1,246,654	-		GFF4318	0.69	+1.2
1,246,654	-		GFF4318	0.69	+0.1
1,246,698	+		GFF4318	0.74	-1.0
1,246,699	-		GFF4318	0.74	-0.1
1,246,699	-		GFF4318	0.74	+0.0
1,246,761	+		GFF4318	0.80	-0.4
1,246,761	+		GFF4318	0.80	-0.0
1,246,762	-		GFF4318	0.80	-1.2
1,246,762	-		GFF4318	0.80	-1.1
1,246,978	+				+0.4
1,246,978	+				-0.7
1,246,979	-				+0.6
1,246,979	-				+0.1
1,246,993	+				-0.3
1,246,993	+				+0.0
1,246,993	+				+0.3
1,246,993	+				-0.3
1,246,994	-				+0.9
1,246,994	-				-0.4
1,246,994	-				+0.5
1,246,994	-				-0.5
1,246,994	-				+0.4
1,247,069	-				-0.7
1,247,150	-		GFF4319	0.12	-0.5
1,247,416	+		GFF4319	0.30	-1.0
1,247,416	+		GFF4319	0.30	-0.4
1,247,416	+		GFF4319	0.30	+0.8
1,247,416	+		GFF4319	0.30	+0.8
1,247,417	-		GFF4319	0.30	-0.4
1,247,417	-		GFF4319	0.30	+1.2
1,247,417	-		GFF4319	0.30	+0.4
1,247,972	-		GFF4319	0.68	-0.9
1,248,091	+		GFF4319	0.76	-1.0
1,248,092	-		GFF4319	0.76	+0.4
1,248,266	-		GFF4319	0.88	+0.2
1,248,415	+				+0.3
1,248,705	+		GFF4320	0.22	-1.2
1,248,706	-		GFF4320	0.22	-0.3
1,248,706	-		GFF4320	0.22	+0.1
1,248,861	+		GFF4320	0.35	-0.2
1,248,862	-		GFF4320	0.35	+0.0
1,249,116	+		GFF4320	0.55	-0.4
1,249,116	+		GFF4320	0.55	+0.9
1,249,117	-		GFF4320	0.55	+0.1
1,249,428	+		GFF4320	0.81	+0.2
1,249,428	+		GFF4320	0.81	+0.2
1,249,428	+		GFF4320	0.81	+0.6
1,249,428	+		GFF4320	0.81	+0.1
1,249,429	-		GFF4320	0.81	+0.1
1,249,429	-		GFF4320	0.81	-0.0
1,249,429	-		GFF4320	0.81	+0.1
1,249,429	-		GFF4320	0.81	-0.5
1,249,429	-		GFF4320	0.81	+2.6
1,249,429	-		GFF4320	0.81	-0.1