Experiment: Ying_AminoAcid20 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3968 and GFF3969 overlap by 4 nucleotides GFF3969 and GFF3970 are separated by 64 nucleotides
GFF3968 - hypothetical protein, at 883,062 to 884,996
GFF3968
GFF3969 - Conserved domain protein, at 884,993 to 886,045
GFF3969
GFF3970 - Adenylate cyclase (EC 4.6.1.1), at 886,110 to 887,879
GFF3970
Position (kb) 884
885
886
887 Strain fitness (log2 ratio) -1
0
1 at 884.059 kb on + strand, within GFF3968 at 884.059 kb on + strand, within GFF3968 at 884.059 kb on + strand, within GFF3968 at 884.059 kb on + strand, within GFF3968 at 884.060 kb on - strand, within GFF3968 at 884.060 kb on - strand, within GFF3968 at 884.060 kb on - strand, within GFF3968 at 884.060 kb on - strand, within GFF3968 at 884.060 kb on - strand, within GFF3968 at 884.060 kb on - strand, within GFF3968 at 884.060 kb on - strand, within GFF3968 at 884.060 kb on - strand, within GFF3968 at 884.060 kb on - strand, within GFF3968 at 884.060 kb on - strand, within GFF3968 at 884.266 kb on + strand, within GFF3968 at 884.267 kb on - strand, within GFF3968 at 884.267 kb on - strand, within GFF3968 at 884.302 kb on + strand, within GFF3968 at 884.302 kb on + strand, within GFF3968 at 884.743 kb on + strand, within GFF3968 at 884.744 kb on - strand, within GFF3968 at 884.869 kb on + strand at 884.869 kb on + strand at 884.870 kb on - strand at 884.870 kb on - strand at 884.905 kb on + strand at 884.906 kb on - strand at 885.078 kb on + strand at 885.261 kb on + strand, within GFF3969 at 885.261 kb on + strand, within GFF3969 at 885.262 kb on - strand, within GFF3969 at 885.262 kb on - strand, within GFF3969 at 885.383 kb on + strand, within GFF3969 at 885.385 kb on + strand, within GFF3969 at 885.385 kb on + strand, within GFF3969 at 885.385 kb on + strand, within GFF3969 at 885.386 kb on - strand, within GFF3969 at 885.386 kb on - strand, within GFF3969 at 885.386 kb on - strand, within GFF3969 at 885.676 kb on - strand, within GFF3969 at 885.676 kb on - strand, within GFF3969 at 886.105 kb on - strand at 886.105 kb on - strand at 886.105 kb on - strand at 886.189 kb on + strand at 886.189 kb on + strand at 886.189 kb on + strand at 886.189 kb on + strand at 886.189 kb on + strand at 886.189 kb on + strand at 886.189 kb on + strand at 886.190 kb on - strand at 886.190 kb on - strand at 886.190 kb on - strand at 886.190 kb on - strand at 886.190 kb on - strand at 886.190 kb on - strand at 886.402 kb on + strand, within GFF3970 at 886.403 kb on - strand, within GFF3970 at 886.406 kb on - strand, within GFF3970 at 886.406 kb on - strand, within GFF3970 at 886.406 kb on - strand, within GFF3970 at 886.501 kb on + strand, within GFF3970 at 886.501 kb on + strand, within GFF3970 at 886.502 kb on - strand, within GFF3970 at 886.502 kb on - strand, within GFF3970
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 1 remove 884,059 + GFF3968 0.52 -0.2 884,059 + GFF3968 0.52 +0.5 884,059 + GFF3968 0.52 -0.4 884,059 + GFF3968 0.52 -0.1 884,060 - GFF3968 0.52 -0.3 884,060 - GFF3968 0.52 -0.6 884,060 - GFF3968 0.52 +0.3 884,060 - GFF3968 0.52 +0.4 884,060 - GFF3968 0.52 -0.1 884,060 - GFF3968 0.52 +0.2 884,060 - GFF3968 0.52 +1.2 884,060 - GFF3968 0.52 +0.3 884,060 - GFF3968 0.52 -1.1 884,060 - GFF3968 0.52 -0.1 884,266 + GFF3968 0.62 -0.2 884,267 - GFF3968 0.62 +0.8 884,267 - GFF3968 0.62 +1.0 884,302 + GFF3968 0.64 +0.1 884,302 + GFF3968 0.64 -0.2 884,743 + GFF3968 0.87 -1.0 884,744 - GFF3968 0.87 +1.2 884,869 + +0.1 884,869 + +1.0 884,870 - +0.1 884,870 - -1.2 884,905 + -0.5 884,906 - -1.1 885,078 + -0.3 885,261 + GFF3969 0.25 -1.5 885,261 + GFF3969 0.25 +0.7 885,262 - GFF3969 0.26 -0.1 885,262 - GFF3969 0.26 +0.2 885,383 + GFF3969 0.37 +0.0 885,385 + GFF3969 0.37 +0.4 885,385 + GFF3969 0.37 +0.6 885,385 + GFF3969 0.37 -0.5 885,386 - GFF3969 0.37 -0.5 885,386 - GFF3969 0.37 +0.6 885,386 - GFF3969 0.37 -0.1 885,676 - GFF3969 0.65 +0.1 885,676 - GFF3969 0.65 +1.0 886,105 - -0.2 886,105 - +0.2 886,105 - -0.0 886,189 + +0.2 886,189 + +1.1 886,189 + +0.8 886,189 + +0.0 886,189 + -0.0 886,189 + +0.3 886,189 + -0.3 886,190 - +0.1 886,190 - -0.4 886,190 - +0.2 886,190 - -0.8 886,190 - +0.8 886,190 - +0.4 886,402 + GFF3970 0.16 +0.0 886,403 - GFF3970 0.17 +0.0 886,406 - GFF3970 0.17 -0.1 886,406 - GFF3970 0.17 -0.1 886,406 - GFF3970 0.17 +0.8 886,501 + GFF3970 0.22 +0.2 886,501 + GFF3970 0.22 +0.1 886,502 - GFF3970 0.22 +0.4 886,502 - GFF3970 0.22 -0.1
Or see this region's nucleotide sequence