Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3540

Experiment: Ying_AminoAcid20 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 1
430,440	+		GFF3539	0.55	+0.2
430,552	+		GFF3539	0.63	-0.2
430,552	+		GFF3539	0.63	+0.2
430,553	-		GFF3539	0.63	+0.7
430,553	-		GFF3539	0.63	+0.4
430,553	-		GFF3539	0.63	+1.1
430,589	-		GFF3539	0.65	+0.2
430,711	+		GFF3539	0.74	-0.3
430,711	+		GFF3539	0.74	+0.3
430,712	-		GFF3539	0.74	-0.3
430,771	+		GFF3539	0.78	+0.1
430,771	+		GFF3539	0.78	+0.2
430,771	+		GFF3539	0.78	-0.2
430,904	-		GFF3539	0.88	-0.6
430,904	-		GFF3539	0.88	+0.3
430,904	-		GFF3539	0.88	+0.1
431,192	+				+0.4
431,192	+				+0.5
433,335	+		GFF3542	0.38	+0.5
433,335	+		GFF3542	0.38	+1.1
433,336	-		GFF3542	0.38	-0.3