Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF347

Experiment: Ying_AminoAcid20 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 1
8,904	+		GFF346	0.60	-0.2
8,904	+		GFF346	0.60	-0.4
8,904	+		GFF346	0.60	-0.7
8,905	-		GFF346	0.60	-0.1
8,916	+		GFF346	0.61	+0.1
8,916	+		GFF346	0.61	-1.7
9,039	+		GFF346	0.67	-0.3
9,039	+		GFF346	0.67	+1.0
9,040	-		GFF346	0.67	-0.4
9,075	+		GFF346	0.69	-1.1
9,075	+		GFF346	0.69	-0.7
9,076	-		GFF346	0.69	-1.3
9,078	+		GFF346	0.69	-0.3
9,079	-		GFF346	0.69	-1.3
9,079	-		GFF346	0.69	-0.0
9,079	-		GFF346	0.69	-0.5
9,079	-		GFF346	0.69	-0.1
9,079	-		GFF346	0.69	-0.9
9,424	-		GFF346	0.88	-0.2
9,619	-				+0.6
9,619	-				+0.3
9,669	+				-0.2
9,689	+				-0.3
9,689	+				-0.2
9,690	-				+1.3
9,768	+				-0.5
9,769	-				+0.7
9,772	+				+0.2
9,772	+				+0.0
9,772	+				-0.2
9,772	+				+0.0
9,772	+				-1.6
9,772	+				-1.0
9,773	-				-0.6
9,876	+				-0.6
9,877	-				-0.6
9,877	-				-1.1
9,877	-				-1.5
9,877	-				-0.0
9,951	+		GFF347	0.13	-0.9
9,951	+		GFF347	0.13	+0.2
9,952	-		GFF347	0.13	+0.1
10,131	+		GFF347	0.26	+0.6
10,132	-		GFF347	0.26	-1.7
10,132	-		GFF347	0.26	-0.4
10,360	-		GFF347	0.42	-0.3
10,407	+		GFF347	0.45	+0.0
10,434	+		GFF347	0.47	+0.6
10,446	+		GFF347	0.48	+0.2
10,497	+		GFF347	0.51	+0.1
10,497	+		GFF347	0.51	+0.4
10,497	+		GFF347	0.51	+0.0
10,497	+		GFF347	0.51	+0.9
10,498	-		GFF347	0.51	-1.0
10,498	-		GFF347	0.51	-0.4
10,498	-		GFF347	0.51	-0.4
10,498	-		GFF347	0.51	-1.0
10,498	-		GFF347	0.51	-0.1
10,743	+		GFF347	0.68	-0.4
10,743	+		GFF347	0.68	-1.2
10,744	-		GFF347	0.68	-0.3
10,803	+		GFF347	0.73	+0.1
10,803	+		GFF347	0.73	-0.3
10,804	-		GFF347	0.73	-1.0
10,804	-		GFF347	0.73	+0.0
10,804	-		GFF347	0.73	+0.2
10,887	+		GFF347	0.78	-1.5
10,908	+		GFF347	0.80	+0.6
10,944	+		GFF347	0.82	-0.0
11,053	-				-0.6
11,112	+				+0.5
11,113	-				+0.6
11,212	+				-0.1
11,213	-				-0.2
11,213	-				-0.7
11,245	+				-0.3
11,246	-				+0.3
11,305	+				-0.3
11,476	+		GFF348	0.22	+0.1
11,504	-		GFF348	0.24	+0.3
11,504	-		GFF348	0.24	-0.8
11,504	-		GFF348	0.24	+0.2
11,530	+		GFF348	0.26	-0.3
11,531	-		GFF348	0.26	+0.3
11,602	+		GFF348	0.32	-0.1
11,602	+		GFF348	0.32	-0.4
11,602	+		GFF348	0.32	+0.1
11,602	+		GFF348	0.32	+0.6
11,899	+		GFF348	0.54	+0.6
11,900	-		GFF348	0.54	-0.1
11,900	-		GFF348	0.54	-1.2
12,115	+		GFF348	0.70	-0.3
12,115	+		GFF348	0.70	+0.2
12,115	+		GFF348	0.70	-0.8